Click here to switch to the map view.

The map label for this gene is spmB [H]

Identifier: 153934572

GI number: 153934572

Start: 94522

End: 95040

Strand: Direct

Name: spmB [H]

Synonym: CLC_0119

Alternate gene names: 153934572

Gene position: 94522-95040 (Clockwise)

Preceding gene: 153937227

Following gene: 153935117

Centisome position: 2.51

GC content: 30.83

Gene sequence:

>519_bases
GTGAATTATATAGTTAAAGCCATAATTCCTATTATTATACTTTTAATCATAGCCTATGGAATGATTAAAAGAGTTAAAGT
ATATGAATGTTTTGTTGAGGGGGCCAAAGATGGTATAAGCATATGCATTAAAATATTTCCATATCTTCTTGCTATGATGG
TAGCTATAGCTGTGTTCAGAGAATCTAAAGCTTTAGACTGTTTAATCAATATTCTAAGACCAGTATCAAATTTAATAGGG
TTGCCAGGAGAATTAGTACCCTTAGTTTTAATAAAACCTTTATCAGGAAGCGGTGCTTTGGGGGTATTTGCAGATATATT
AAAACAGTTTGGTCCAGATAGTAATGTAGGGAAGATGGCATCCATTATAATGGGATCTACAGAAACTATTTTTTATACAA
TAACAGTTTATTTTGGAGCTGTTGGAATAAAAAAAATAAGACATACATTATGGGCTGCTATTTTTGCAGATATGGTGGCT
ATAATAATGGCTGTATTAGTAACTAATATAATACTATAA

Upstream 100 bases:

>100_bases
TGAAATAATAATACCAGCTATAATAGTTACATCCACAGCAGCCTTTTGTGGAGTGATTTTTTGTAAAATATTACAGAAAT
ATTTTTAAAGGAGGAAGCTT

Downstream 100 bases:

>100_bases
AAAAGGGACTGTTCTAAAATGGCTTTTAAATCATTTTAGGGTTCAGTTTCTTTTTATATTCTAATGATTTTTTAATAAAG
TTATTAAAATTATTGAAGTT

Product: spore maturation protein B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MNYIVKAIIPIIILLIIAYGMIKRVKVYECFVEGAKDGISICIKIFPYLLAMMVAIAVFRESKALDCLINILRPVSNLIG
LPGELVPLVLIKPLSGSGALGVFADILKQFGPDSNVGKMASIIMGSTETIFYTITVYFGAVGIKKIRHTLWAAIFADMVA
IIMAVLVTNIIL

Sequences:

>Translated_172_residues
MNYIVKAIIPIIILLIIAYGMIKRVKVYECFVEGAKDGISICIKIFPYLLAMMVAIAVFRESKALDCLINILRPVSNLIG
LPGELVPLVLIKPLSGSGALGVFADILKQFGPDSNVGKMASIIMGSTETIFYTITVYFGAVGIKKIRHTLWAAIFADMVA
IIMAVLVTNIIL
>Mature_172_residues
MNYIVKAIIPIIILLIIAYGMIKRVKVYECFVEGAKDGISICIKIFPYLLAMMVAIAVFRESKALDCLINILRPVSNLIG
LPGELVPLVLIKPLSGSGALGVFADILKQFGPDSNVGKMASIIMGSTETIFYTITVYFGAVGIKKIRHTLWAAIFADMVA
IIMAVLVTNIIL

Specific function: Involved in spore core dehydration; might be involved in the transport of something into or out of the forespore or could be required for some modification of the cortex peptidoglycan structure [H]

COG id: COG0700

COG function: function code S; Uncharacterized membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the spmB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011642 [H]

Pfam domain/function: PF07670 Gate [H]

EC number: NA

Molecular weight: Translated: 18691; Mature: 18691

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYIVKAIIPIIILLIIAYGMIKRVKVYECFVEGAKDGISICIKIFPYLLAMMVAIAVFR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
ESKALDCLINILRPVSNLIGLPGELVPLVLIKPLSGSGALGVFADILKQFGPDSNVGKMA
CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHEECCCCCCHHHHHHHHHHHHCCCCCHHHHH
SIIMGSTETIFYTITVYFGAVGIKKIRHTLWAAIFADMVAIIMAVLVTNIIL
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNYIVKAIIPIIILLIIAYGMIKRVKVYECFVEGAKDGISICIKIFPYLLAMMVAIAVFR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
ESKALDCLINILRPVSNLIGLPGELVPLVLIKPLSGSGALGVFADILKQFGPDSNVGKMA
CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHEECCCCCCHHHHHHHHHHHHCCCCCHHHHH
SIIMGSTETIFYTITVYFGAVGIKKIRHTLWAAIFADMVAIIMAVLVTNIIL
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7934829; 9384377; 1548223; 7642500 [H]