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The map label for this gene is abrB [H]

Identifier: 153934492

GI number: 153934492

Start: 87849

End: 88094

Strand: Reverse

Name: abrB [H]

Synonym: CLC_0111

Alternate gene names: 153934492

Gene position: 88094-87849 (Counterclockwise)

Preceding gene: 153934984

Following gene: 153937176

Centisome position: 2.34

GC content: 28.86

Gene sequence:

>246_bases
ATGAAATCAACAGGTGTGGTTAGAAGAGTAGACGAATTAGGAAGAATTGTTATTCCTATAGAATTAAGAAGGACATTAGA
TATAGCTGAAAAAGATGCTCTAGAAATCTATGTAGATGGTGAACAAATCATATTAAAGAAATATGAGCCAGCATGTATAT
TCTGCGGAGATGCTAGAGATGTTATAAACTATAAAGGTAAAAATATTTGTAAAAACTGTCTTAATGAAATAAAAGACAAT
AAATAA

Upstream 100 bases:

>100_bases
TTGTAAATTAAATATAAAATATGTTGACTTTTAATGTCATATTTGCTATTATTTAATTAAACTATTGTCGAAAATTGATA
TTATTCGAGGAGGAAAATAT

Downstream 100 bases:

>100_bases
TTTAAAAGCCTCATCTAGGGGCTTTTTTTAAATTATATAAACTAAAAGTGGAAACTAATTTTAGTTTCCACTTTTGTTGT
TTTATATAAAAATTATTAAT

Product: AbrB family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 81; Mature: 81

Protein sequence:

>81_residues
MKSTGVVRRVDELGRIVIPIELRRTLDIAEKDALEIYVDGEQIILKKYEPACIFCGDARDVINYKGKNICKNCLNEIKDN
K

Sequences:

>Translated_81_residues
MKSTGVVRRVDELGRIVIPIELRRTLDIAEKDALEIYVDGEQIILKKYEPACIFCGDARDVINYKGKNICKNCLNEIKDN
K
>Mature_81_residues
MKSTGVVRRVDELGRIVIPIELRRTLDIAEKDALEIYVDGEQIILKKYEPACIFCGDARDVINYKGKNICKNCLNEIKDN
K

Specific function: Ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation. It controls the expression of genes spovG and tycA. AbrB binds to the tycA

COG id: COG2002

COG function: function code K; Regulators of stationary/sporulation gene expression

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis abh and spoVT [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006339
- InterPro:   IPR007159 [H]

Pfam domain/function: PF04014 SpoVT_AbrB [H]

EC number: NA

Molecular weight: Translated: 9269; Mature: 9269

Theoretical pI: Translated: 7.90; Mature: 7.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.9 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
4.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSTGVVRRVDELGRIVIPIELRRTLDIAEKDALEIYVDGEQIILKKYEPACIFCGDARD
CCCCHHHHHHHHCCCEEEEEECCCHHCCCCCCCEEEEECCCEEEEEECCCEEEEECCCCH
VINYKGKNICKNCLNEIKDNK
HHCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKSTGVVRRVDELGRIVIPIELRRTLDIAEKDALEIYVDGEQIILKKYEPACIFCGDARD
CCCCHHHHHHHHCCCEEEEEECCCHHCCCCCCCEEEEECCCEEEEEECCCEEEEECCCCH
VINYKGKNICKNCLNEIKDNK
HHCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3145384; 2554317; 7584024; 9384377; 2504584; 1908787 [H]