| Definition | Clostridium botulinum A str. ATCC 19397, complete genome. |
|---|---|
| Accession | NC_009697 |
| Length | 3,863,450 |
Click here to switch to the map view.
The map label for this gene is fldC [H]
Identifier: 153934126
GI number: 153934126
Start: 3471452
End: 3472576
Strand: Reverse
Name: fldC [H]
Synonym: CLB_3345
Alternate gene names: 153934126
Gene position: 3472576-3471452 (Counterclockwise)
Preceding gene: 153931140
Following gene: 153930801
Centisome position: 89.88
GC content: 30.31
Gene sequence:
>1125_bases ATGTCAAATTCAGATAAATTCTTTAATGACTTTAAGGATGTTATAGACCATCCTAAAAAATATATAATGAAGCATATAGA AAAAACTGGGCAAAAGGCTATAGGATGTATGCCATTATATACTCCTGAAGAACTTGTATTAGCTGCTGGAATGTTTCCAG TAGGTGTATGGGGAAGCAATACAGAACTTTCAAAAGCTAAAACATATTTCCCAGCATTTATTTGCTCAATATTACAAACA ACATTGGAAAATGCATTAAATGGGGAATATGATATGTTGTCCGGTATGATGATTCCAAATTATTGTGACTCATTAAAATG CATGGGACAAAATTTTAAATTAACAGTTGAAAATATTGACTTTATACCAGTAACAGTTCCACAAAACAGAAAAATGGAAG CTGGAAAAGAATTTTTAAAAAGTCAATACAAGATGAATATTGAACAGCTAGAAAAGATTTCTGGTAATAAAATAACAGAT GAATCTTTAGAAAAGGCTATAGAAATATATGATGAACACAGAAAAATAATGAATGACTTTTCAATGTTAGCATCAAAATA TCCAGATGTAATAACACCAACCAAACGTAATTATGTTATGAAGTCTGCTTATTATATGGATAAGAAAGAACATACTGAAA AAGTTAGACAATTGATGGATGAAATTAAAACTATAGATTCAAAACCATTTGAAGGAAAGAGAGTTATAACTACAGGTATA ATAGCAGATTCAGAAGATTTACTTAAAATATTAGAAGAAAACAATATAGCTATAGTTGGTGATGATATAGCACATGAATC CAGACAATATAGAACTTTAACACCAGAGGCAGCCACACCAATGGATAGGTTAGCTGAGCAATTTGCTAATAGAGAATGTA GTACTTTATATGACCCTGAAAAGAAAAGGGGTAAATATATAGTAGAAATGGCTAAAGAGAGAAAAGCAGATGGGATTATA TTTTTCATGACAAAATTCTGTGACCCAGAGGAATATGATTATCCACAAATGAAAAAGGATTTTGAAGAAGCAGGTATTCC ACATGTACTAATAGAAACTGATATGCAAATGAAAAATTATGAACAAGCTAGAACTGCAATTCAAGCTTTTTCAGAAACAC TTTAA
Upstream 100 bases:
>100_bases GGGGATCAAGCAGACCCAAGAAATTTCTCAGAAGCACAATATGATACTAGAATTCAAGGACTTAATGAAGTAATGGTTGC TAAAAAGGAGGCTGAATAAG
Downstream 100 bases:
>100_bases TAAAAGTTTTCAAAATTTACTGTAAACTTTATTAATTGAAACATTGATTTCTCTTCTCTCTTTATAAAATAATATTTATT TTTCAAAAAAGTTATCTTTG
Product: R-phenyllactate dehydratase, C subunit
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 374; Mature: 373
Protein sequence:
>374_residues MSNSDKFFNDFKDVIDHPKKYIMKHIEKTGQKAIGCMPLYTPEELVLAAGMFPVGVWGSNTELSKAKTYFPAFICSILQT TLENALNGEYDMLSGMMIPNYCDSLKCMGQNFKLTVENIDFIPVTVPQNRKMEAGKEFLKSQYKMNIEQLEKISGNKITD ESLEKAIEIYDEHRKIMNDFSMLASKYPDVITPTKRNYVMKSAYYMDKKEHTEKVRQLMDEIKTIDSKPFEGKRVITTGI IADSEDLLKILEENNIAIVGDDIAHESRQYRTLTPEAATPMDRLAEQFANRECSTLYDPEKKRGKYIVEMAKERKADGII FFMTKFCDPEEYDYPQMKKDFEEAGIPHVLIETDMQMKNYEQARTAIQAFSETL
Sequences:
>Translated_374_residues MSNSDKFFNDFKDVIDHPKKYIMKHIEKTGQKAIGCMPLYTPEELVLAAGMFPVGVWGSNTELSKAKTYFPAFICSILQT TLENALNGEYDMLSGMMIPNYCDSLKCMGQNFKLTVENIDFIPVTVPQNRKMEAGKEFLKSQYKMNIEQLEKISGNKITD ESLEKAIEIYDEHRKIMNDFSMLASKYPDVITPTKRNYVMKSAYYMDKKEHTEKVRQLMDEIKTIDSKPFEGKRVITTGI IADSEDLLKILEENNIAIVGDDIAHESRQYRTLTPEAATPMDRLAEQFANRECSTLYDPEKKRGKYIVEMAKERKADGII FFMTKFCDPEEYDYPQMKKDFEEAGIPHVLIETDMQMKNYEQARTAIQAFSETL >Mature_373_residues SNSDKFFNDFKDVIDHPKKYIMKHIEKTGQKAIGCMPLYTPEELVLAAGMFPVGVWGSNTELSKAKTYFPAFICSILQTT LENALNGEYDMLSGMMIPNYCDSLKCMGQNFKLTVENIDFIPVTVPQNRKMEAGKEFLKSQYKMNIEQLEKISGNKITDE SLEKAIEIYDEHRKIMNDFSMLASKYPDVITPTKRNYVMKSAYYMDKKEHTEKVRQLMDEIKTIDSKPFEGKRVITTGII ADSEDLLKILEENNIAIVGDDIAHESRQYRTLTPEAATPMDRLAEQFANRECSTLYDPEKKRGKYIVEMAKERKADGIIF FMTKFCDPEEYDYPQMKKDFEEAGIPHVLIETDMQMKNYEQARTAIQAFSETL
Specific function: Catalyzes the reversible dehydration of 2- hydroxyglutaryl-CoA to glutaconyl-CoA. This is a key step in the fermentation of glutamate [H]
COG id: COG1775
COG function: function code E; Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI87082427, Length=367, Percent_Identity=22.8882833787466, Blast_Score=91, Evalue=1e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010327 [H]
Pfam domain/function: PF06050 HGD-D [H]
EC number: NA
Molecular weight: Translated: 43143; Mature: 43012
Theoretical pI: Translated: 5.06; Mature: 5.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 5.6 %Met (Translated Protein) 7.2 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 5.4 %Met (Mature Protein) 7.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNSDKFFNDFKDVIDHPKKYIMKHIEKTGQKAIGCMPLYTPEELVLAAGMFPVGVWGSN CCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCEEECCCCC TELSKAKTYFPAFICSILQTTLENALNGEYDMLSGMMIPNYCDSLKCMGQNFKLTVENID CCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHCCCCCEEEEECCC FIPVTVPQNRKMEAGKEFLKSQYKMNIEQLEKISGNKITDESLEKAIEIYDEHRKIMNDF EEEEECCCCCCHHHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH SMLASKYPDVITPTKRNYVMKSAYYMDKKEHTEKVRQLMDEIKTIDSKPFEGKRVITTGI HHHHHHCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEE IADSEDLLKILEENNIAIVGDDIAHESRQYRTLTPEAATPMDRLAEQFANRECSTLYDPE ECCHHHHHHHHHCCCEEEEECHHHHCCCCCEECCCCCCCCHHHHHHHHHCCCCCCCCCCH KKRGKYIVEMAKERKADGIIFFMTKFCDPEEYDYPQMKKDFEEAGIPHVLIETDMQMKNY HHHHHHHHHHHHHCCCCCEEEEHHHCCCCCCCCCCHHHHHHHHCCCCEEEEECCCHHHHH EQARTAIQAFSETL HHHHHHHHHHHHCC >Mature Secondary Structure SNSDKFFNDFKDVIDHPKKYIMKHIEKTGQKAIGCMPLYTPEELVLAAGMFPVGVWGSN CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCEEECCCCC TELSKAKTYFPAFICSILQTTLENALNGEYDMLSGMMIPNYCDSLKCMGQNFKLTVENID CCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHCCCCCEEEEECCC FIPVTVPQNRKMEAGKEFLKSQYKMNIEQLEKISGNKITDESLEKAIEIYDEHRKIMNDF EEEEECCCCCCHHHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH SMLASKYPDVITPTKRNYVMKSAYYMDKKEHTEKVRQLMDEIKTIDSKPFEGKRVITTGI HHHHHHCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEE IADSEDLLKILEENNIAIVGDDIAHESRQYRTLTPEAATPMDRLAEQFANRECSTLYDPE ECCHHHHHHHHHCCCEEEEECHHHHCCCCCEECCCCCCCCHHHHHHHHHCCCCCCCCCCH KKRGKYIVEMAKERKADGIIFFMTKFCDPEEYDYPQMKKDFEEAGIPHVLIETDMQMKNY HHHHHHHHHHHHHCCCCCEEEEHHHCCCCCCCCCCHHHHHHHHCCCCEEEEECCCHHHHH EQARTAIQAFSETL HHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2659350; 3691501; 11106419 [H]