Click here to switch to the map view.

The map label for this gene is ytqA [H]

Identifier: 153932700

GI number: 153932700

Start: 3775693

End: 3776625

Strand: Reverse

Name: ytqA [H]

Synonym: CLB_3636

Alternate gene names: 153932700

Gene position: 3776625-3775693 (Counterclockwise)

Preceding gene: 153932128

Following gene: 153933558

Centisome position: 97.75

GC content: 29.58

Gene sequence:

>933_bases
ATGGAAAGAAAATGGTATGATAAGCCATATCATAGCTTAAATTATTTTTTAAGAAATAAATTTGGCTGTAAAGTTTTTAA
AATATCATTGGATGCTGGATTTTCTTGTCCTAACAGAGATGGGAAGGTAAGTAAAGGAGGATGTATATATTGCAGCGAAA
GAGGTTCAGGAGACTTTGCAGGAGATAGGAACTTTAAGATACATAAACAGTTTGAGGATATAAAAAAAATAATGAAAGAA
AAATGGAGTAGTGATAAATACATTGCTTATTTTCAAGCTTATACTAATACTTATGCTCCTGTAAATATACTAAGAGAAAA
GTATGAGGAAGCTATGAGTGAGGAAGGCGTAGTTGCTTTAGCTATAGCAACAAGACCAGATTGCTTAGATCAAGATGTTT
TAAATCTTATAGAAGAATTAAGTAAAAAAATATATATATGGGTAGAATTAGGACTTCAAACTGTAAATGATGAAACATCT
AAAATTATAAATAGAGGATATAAGTTAAATGTTTTTGAAAAAGCGGTAAAAGATTTAAGGGAGAGAAATATAGATATAGT
GGTACATAGCATATTTGGATTACCAGGGGAAACAAAAGAAGATATGGTAGGGACAGTTAAATATATATCTAAATTAGATA
TTCAAGGAGTTAAATTTCATTTATTACATCTTTTAAAGGATACTCCTCTAGTAAAATTATATGAAAGCGGTAATTTAGAA
TTTTTGGATATGGATGAGTATGTAGAATTAATATGCGAAGCTATAACTTTATTACCACCTAATATGGTTGTCCATAGGCT
TACAGGGGATGCGCCTAGAAACCTTTTAGTAGGACCCATGTGGAGTCTTAAGAAATGGGAAGTTTTAAATGCTATAGATA
AAAAAATGAAGGAAGATAATTTATATCAGGGCAAAATTTTTAATGATAAATAA

Upstream 100 bases:

>100_bases
GATTTAAAAGAATTTAAAGTTAAAAAAATGTAGTTGTTTTGAAAAAAAAGTATCTGTGACATATAATATTCACAGATACT
TTTTTTTGGAGGAATTTATT

Downstream 100 bases:

>100_bases
AATTCACATAAATATTTAAAATATTAAATAATGGGGGGAGCTTTATGAATATTGATATAGTAATTTCAGCTGATCATATA
GATGAGAAGGGGTTGATTAA

Product: radical SAM family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MERKWYDKPYHSLNYFLRNKFGCKVFKISLDAGFSCPNRDGKVSKGGCIYCSERGSGDFAGDRNFKIHKQFEDIKKIMKE
KWSSDKYIAYFQAYTNTYAPVNILREKYEEAMSEEGVVALAIATRPDCLDQDVLNLIEELSKKIYIWVELGLQTVNDETS
KIINRGYKLNVFEKAVKDLRERNIDIVVHSIFGLPGETKEDMVGTVKYISKLDIQGVKFHLLHLLKDTPLVKLYESGNLE
FLDMDEYVELICEAITLLPPNMVVHRLTGDAPRNLLVGPMWSLKKWEVLNAIDKKMKEDNLYQGKIFNDK

Sequences:

>Translated_310_residues
MERKWYDKPYHSLNYFLRNKFGCKVFKISLDAGFSCPNRDGKVSKGGCIYCSERGSGDFAGDRNFKIHKQFEDIKKIMKE
KWSSDKYIAYFQAYTNTYAPVNILREKYEEAMSEEGVVALAIATRPDCLDQDVLNLIEELSKKIYIWVELGLQTVNDETS
KIINRGYKLNVFEKAVKDLRERNIDIVVHSIFGLPGETKEDMVGTVKYISKLDIQGVKFHLLHLLKDTPLVKLYESGNLE
FLDMDEYVELICEAITLLPPNMVVHRLTGDAPRNLLVGPMWSLKKWEVLNAIDKKMKEDNLYQGKIFNDK
>Mature_310_residues
MERKWYDKPYHSLNYFLRNKFGCKVFKISLDAGFSCPNRDGKVSKGGCIYCSERGSGDFAGDRNFKIHKQFEDIKKIMKE
KWSSDKYIAYFQAYTNTYAPVNILREKYEEAMSEEGVVALAIATRPDCLDQDVLNLIEELSKKIYIWVELGLQTVNDETS
KIINRGYKLNVFEKAVKDLRERNIDIVVHSIFGLPGETKEDMVGTVKYISKLDIQGVKFHLLHLLKDTPLVKLYESGNLE
FLDMDEYVELICEAITLLPPNMVVHRLTGDAPRNLLVGPMWSLKKWEVLNAIDKKMKEDNLYQGKIFNDK

Specific function: Unknown

COG id: COG1242

COG function: function code R; Predicted Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI2367204, Length=286, Percent_Identity=34.6153846153846, Blast_Score=218, Evalue=4e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR005911
- InterPro:   IPR006638
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 35862; Mature: 35862

Theoretical pI: Translated: 7.45; Mature: 7.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERKWYDKPYHSLNYFLRNKFGCKVFKISLDAGFSCPNRDGKVSKGGCIYCSERGSGDFA
CCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCC
GDRNFKIHKQFEDIKKIMKEKWSSDKYIAYFQAYTNTYAPVNILREKYEEAMSEEGVVAL
CCCCCEEHHHHHHHHHHHHHHCCCCCEEEEEEEHHCCCCHHHHHHHHHHHHHCCCCEEEE
AIATRPDCLDQDVLNLIEELSKKIYIWVELGLQTVNDETSKIINRGYKLNVFEKAVKDLR
EEECCCCCCCHHHHHHHHHHHHEEEEEEEECCCCCCHHHHHHHHCCCEEEHHHHHHHHHH
ERNIDIVVHSIFGLPGETKEDMVGTVKYISKLDIQGVKFHLLHLLKDTPLVKLYESGNLE
HCCCEEEEEEHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEECCCEE
FLDMDEYVELICEAITLLPPNMVVHRLTGDAPRNLLVGPMWSLKKWEVLNAIDKKMKEDN
EEEHHHHHHHHHHHHHHCCCHHEEEECCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHCC
LYQGKIFNDK
CEECEEECCC
>Mature Secondary Structure
MERKWYDKPYHSLNYFLRNKFGCKVFKISLDAGFSCPNRDGKVSKGGCIYCSERGSGDFA
CCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCC
GDRNFKIHKQFEDIKKIMKEKWSSDKYIAYFQAYTNTYAPVNILREKYEEAMSEEGVVAL
CCCCCEEHHHHHHHHHHHHHHCCCCCEEEEEEEHHCCCCHHHHHHHHHHHHHCCCCEEEE
AIATRPDCLDQDVLNLIEELSKKIYIWVELGLQTVNDETSKIINRGYKLNVFEKAVKDLR
EEECCCCCCCHHHHHHHHHHHHEEEEEEEECCCCCCHHHHHHHHCCCEEEHHHHHHHHHH
ERNIDIVVHSIFGLPGETKEDMVGTVKYISKLDIQGVKFHLLHLLKDTPLVKLYESGNLE
HCCCEEEEEEHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEECCCEE
FLDMDEYVELICEAITLLPPNMVVHRLTGDAPRNLLVGPMWSLKKWEVLNAIDKKMKEDN
EEEHHHHHHHHHHHHHHCCCHHEEEECCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHCC
LYQGKIFNDK
CEECEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]