Click here to switch to the map view.

The map label for this gene is lytR [H]

Identifier: 153931957

GI number: 153931957

Start: 2751372

End: 2752334

Strand: Reverse

Name: lytR [H]

Synonym: CLB_2631

Alternate gene names: 153931957

Gene position: 2752334-2751372 (Counterclockwise)

Preceding gene: 153934172

Following gene: 153932521

Centisome position: 71.24

GC content: 29.7

Gene sequence:

>963_bases
ATGGGAAGTAAAAAAAAGAAATGGATATTGTCTATATTGGCAGTAATTGTGCTTATGTCAGTGGTTAGCGCATTATATGT
TTATAGTAAGTTAGGATCCGTTAAAAAAGTACCTATATCTAAAGATGATAAGGAATTAAAGATAGATAAAAAAGCAGAGT
CATATGGAGATGATGTTATAAATATAGCATTTTTTGGTTTAGATAGAAGAAAAAAAGAGGAACCTTCAAGATCAGATGCT
GTGATGATACTTTCTTTAGATAAAAAGCATAAAAAAGTGAAACTATCATCTATAATGAGGGATTCCTATGTAGATATAGA
GGGTCATGGAAAAACAAAATTGAATCATGCCTATGCTTATGGGGGACCAGAGTTAGCTATAAAGACTATAAATTCTAATT
TTAAATTAAATATTAGGGATTTTGTAGCAGTAGATTTTTATGGATTAGAAAATATAATAGATACTGTTGGTGGAGTAGAA
ATACCTGTTAGATCTGATGAAATAAAATATATAAATAGCTATATGCAGGGAACTGCAAAAGTTGAAAATAAGGCTGTACA
AGAAGTTCAAAATCCAGGACTACAAAATTTAAATGGTATGCAAGCGGTGGCTTATGCCAGAATAAGGTATACCAGTGGTG
GAGACTATGAAAGAACAGAAAGACAGAGAACAATTTTAACAGCTGTCATGAATAAAATAAAAAAATTAGGTCCTACAGAG
TTTCCTAAAGTAGTAAGCGTTTTGCTTCCTAATGTGGAAAGTAGTCTTTCCTCTACAGAAATAATAAAAATGGGGACTTC
AGTCTTTGCTTTAGGTATAGATAATGTAGAGCAACAAAGATTTCCTTTAGATAATTATTGTGAAGGTAAACTTATAGATG
GTATTTATTATTTATTATTTAACAAGGAAAAAACTATAGATCAAATGTACAAATATATATTTGAAGATATAAAACCTAAT
TAA

Upstream 100 bases:

>100_bases
AGAATTATTTTATTGAAATATATATGCTCTGTGATATTTTATTGCTTTATAAAAATTAATTTTTTATAGTAATATTCCAT
ATTTTGAGGGGAGATATTGT

Downstream 100 bases:

>100_bases
CTTAGTATACTTAGATATGGAGGAAAGTCTTAAGATGAATGAAGAAGTAACCTTAGATTTACAGGAGATTCTTAATGTAT
TAAAAAAGAAAAAAAAGATG

Product: cell envelope-related function transcriptional attenuator

Products: NA

Alternate protein names: Membrane-bound protein lytR [H]

Number of amino acids: Translated: 320; Mature: 319

Protein sequence:

>320_residues
MGSKKKKWILSILAVIVLMSVVSALYVYSKLGSVKKVPISKDDKELKIDKKAESYGDDVINIAFFGLDRRKKEEPSRSDA
VMILSLDKKHKKVKLSSIMRDSYVDIEGHGKTKLNHAYAYGGPELAIKTINSNFKLNIRDFVAVDFYGLENIIDTVGGVE
IPVRSDEIKYINSYMQGTAKVENKAVQEVQNPGLQNLNGMQAVAYARIRYTSGGDYERTERQRTILTAVMNKIKKLGPTE
FPKVVSVLLPNVESSLSSTEIIKMGTSVFALGIDNVEQQRFPLDNYCEGKLIDGIYYLLFNKEKTIDQMYKYIFEDIKPN

Sequences:

>Translated_320_residues
MGSKKKKWILSILAVIVLMSVVSALYVYSKLGSVKKVPISKDDKELKIDKKAESYGDDVINIAFFGLDRRKKEEPSRSDA
VMILSLDKKHKKVKLSSIMRDSYVDIEGHGKTKLNHAYAYGGPELAIKTINSNFKLNIRDFVAVDFYGLENIIDTVGGVE
IPVRSDEIKYINSYMQGTAKVENKAVQEVQNPGLQNLNGMQAVAYARIRYTSGGDYERTERQRTILTAVMNKIKKLGPTE
FPKVVSVLLPNVESSLSSTEIIKMGTSVFALGIDNVEQQRFPLDNYCEGKLIDGIYYLLFNKEKTIDQMYKYIFEDIKPN
>Mature_319_residues
GSKKKKWILSILAVIVLMSVVSALYVYSKLGSVKKVPISKDDKELKIDKKAESYGDDVINIAFFGLDRRKKEEPSRSDAV
MILSLDKKHKKVKLSSIMRDSYVDIEGHGKTKLNHAYAYGGPELAIKTINSNFKLNIRDFVAVDFYGLENIIDTVGGVEI
PVRSDEIKYINSYMQGTAKVENKAVQEVQNPGLQNLNGMQAVAYARIRYTSGGDYERTERQRTILTAVMNKIKKLGPTEF
PKVVSVLLPNVESSLSSTEIIKMGTSVFALGIDNVEQQRFPLDNYCEGKLIDGIYYLLFNKEKTIDQMYKYIFEDIKPN

Specific function: Attenuator role for operon expression [H]

COG id: COG1316

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LytR/CpsA/Psr regulatory protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004474 [H]

Pfam domain/function: PF03816 LytR_cpsA_psr [H]

EC number: NA

Molecular weight: Translated: 36121; Mature: 35990

Theoretical pI: Translated: 9.59; Mature: 9.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSKKKKWILSILAVIVLMSVVSALYVYSKLGSVKKVPISKDDKELKIDKKAESYGDDVI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCEEECCHHHHCCCCEE
NIAFFGLDRRKKEEPSRSDAVMILSLDKKHKKVKLSSIMRDSYVDIEGHGKTKLNHAYAY
EEEEECCCCHHCCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCEEECCCCCCCCCCEEEC
GGPELAIKTINSNFKLNIRDFVAVDFYGLENIIDTVGGVEIPVRSDEIKYINSYMQGTAK
CCCEEEEEEECCCEEEEEHHEEEEEHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHH
VENKAVQEVQNPGLQNLNGMQAVAYARIRYTSGGDYERTERQRTILTAVMNKIKKLGPTE
HHHHHHHHHHCCCCCCCCCHHHEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCH
FPKVVSVLLPNVESSLSSTEIIKMGTSVFALGIDNVEQQRFPLDNYCEGKLIDGIYYLLF
HHHHHHHHHCCHHHHCCHHHHHHHCCEEEEEECCCHHHHCCCCCCCCCCCHHCEEEEEEE
NKEKTIDQMYKYIFEDIKPN
CCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
GSKKKKWILSILAVIVLMSVVSALYVYSKLGSVKKVPISKDDKELKIDKKAESYGDDVI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCEEECCHHHHCCCCEE
NIAFFGLDRRKKEEPSRSDAVMILSLDKKHKKVKLSSIMRDSYVDIEGHGKTKLNHAYAY
EEEEECCCCHHCCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCEEECCCCCCCCCCEEEC
GGPELAIKTINSNFKLNIRDFVAVDFYGLENIIDTVGGVEIPVRSDEIKYINSYMQGTAK
CCCEEEEEEECCCEEEEEHHEEEEEHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHH
VENKAVQEVQNPGLQNLNGMQAVAYARIRYTSGGDYERTERQRTILTAVMNKIKKLGPTE
HHHHHHHHHHCCCCCCCCCHHHEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCH
FPKVVSVLLPNVESSLSSTEIIKMGTSVFALGIDNVEQQRFPLDNYCEGKLIDGIYYLLF
HHHHHHHHHCCHHHHCCHHHHHHHCCEEEEEECCCHHHHCCCCCCCCCCCHHCEEEEEEE
NKEKTIDQMYKYIFEDIKPN
CCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA