Click here to switch to the map view.

The map label for this gene is ysdA [H]

Identifier: 153931940

GI number: 153931940

Start: 2337643

End: 2337900

Strand: Reverse

Name: ysdA [H]

Synonym: CLB_2188

Alternate gene names: 153931940

Gene position: 2337900-2337643 (Counterclockwise)

Preceding gene: 153932496

Following gene: 153931186

Centisome position: 60.51

GC content: 23.64

Gene sequence:

>258_bases
ATGATTAAGTATTATTTTATAGTATTAAATTTATTGGGTTTTTTATGCATGTATATAGATAAAGAAAAGGCTAAAGCAAA
TAAGTGGAGAATAAAGGAGAATACTTTATTGTTAATAGCCTTGTTAGGCGGCAGTATAGGGTCTTATATGGGAATGAAAA
TATTTAGGCATAAGACTAAGCATTCTAAATTTAAATATGGCATTCCTTTTATAATATTAATTCAACTATGTATATTTTTA
TATTTAAGTAAATTATAA

Upstream 100 bases:

>100_bases
ATAAAAACAGATTATGGACTAGAAGGAAAAGTAGAATTCAATTAACATACAATTATAAAAGATAAATTCTACAATTGGTT
TAAAAGGAAAGGGAGGATCT

Downstream 100 bases:

>100_bases
TATTTCAGTATTATATCATTTTATAGAGAGTAGCAAATTTTCGTCTTAATTTAATGGGCATAAAACAGTGAGAATATGGA
AGTTCTATGAAAAAGTTTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 85; Mature: 85

Protein sequence:

>85_residues
MIKYYFIVLNLLGFLCMYIDKEKAKANKWRIKENTLLLIALLGGSIGSYMGMKIFRHKTKHSKFKYGIPFIILIQLCIFL
YLSKL

Sequences:

>Translated_85_residues
MIKYYFIVLNLLGFLCMYIDKEKAKANKWRIKENTLLLIALLGGSIGSYMGMKIFRHKTKHSKFKYGIPFIILIQLCIFL
YLSKL
>Mature_85_residues
MIKYYFIVLNLLGFLCMYIDKEKAKANKWRIKENTLLLIALLGGSIGSYMGMKIFRHKTKHSKFKYGIPFIILIQLCIFL
YLSKL

Specific function: Unknown

COG id: COG3326

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010718 [H]

Pfam domain/function: PF06961 DUF1294 [H]

EC number: NA

Molecular weight: Translated: 10011; Mature: 10011

Theoretical pI: Translated: 10.47; Mature: 10.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKYYFIVLNLLGFLCMYIDKEKAKANKWRIKENTLLLIALLGGSIGSYMGMKIFRHKTK
CHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCEEEEEECCCCHHHHHHHHHHHHHHH
HSKFKYGIPFIILIQLCIFLYLSKL
CCCCCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIKYYFIVLNLLGFLCMYIDKEKAKANKWRIKENTLLLIALLGGSIGSYMGMKIFRHKTK
CHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCEEEEEECCCCHHHHHHHHHHHHHHH
HSKFKYGIPFIILIQLCIFLYLSKL
CCCCCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]