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The map label for this gene is xerD [H]

Identifier: 153930897

GI number: 153930897

Start: 3130417

End: 3131412

Strand: Reverse

Name: xerD [H]

Synonym: CLB_2982

Alternate gene names: 153930897

Gene position: 3131412-3130417 (Counterclockwise)

Preceding gene: 153933234

Following gene: 153932853

Centisome position: 81.05

GC content: 29.82

Gene sequence:

>996_bases
ATGTGCAATACAAGTAGTAAAGAAGAGGTTGTAATTAAATTAGTTGGAAGGCTATCTTTAGAATTTCCAGAAATAGATCA
ATTGAAAGTTAGAAGTATAGCAGAGGAAGTGTTGTATAAATATCATGTATTGCCGCAGGAGACAGCGTTGGTAGCGAGTG
ACATAGAGGAAAAGATAAGTATATATTTAGCAGCTAAAAAATTAGATGGATTGAGTTTGAAGACATTAAAAAATTATAAA
TATAATTTAGCAATATTTGCGGATTATTTAAGAAAACCATTGGCAACTATAAATGCAATGGACCTAAGAATGTTTTTAGC
ACAAAGATGTAAACATATGAAAGCAAGTAGCGTAAATGGTCAAATATCTATATTGAAAAGTTTTTTCGGGTGGTTGCATA
TGGAAGAATATATACCTAAGAATCCAAGTTTAAAATTAAAACAGACTAAGCAGCCTAAAAGGGTAAGACATGCTTTGAAT
GAAGAAGAAATAGAAATCTTAAGACAAGCCTGTGAAACAGATAGAGAAAAAGCCTTAATTGAGTTTTTAATAAGTACTGG
ATGTAGATTATCAGAGGTAATAGGAGTTAATAAAACAGATATAGATTGGAATGAAATGAGCTTGTTTGTAATTGGTAAAG
GTGATAAAGAACGGAAGGTTTATTTTAATACAAAAGCTAAAATTTTATTAAAAAAATATTTATTAACTAGAAGTGATGAA
AATATAGCTTTATTTGTAACAAGCAAGAAACCGCATAATAGGTTAGGAGGTAGAAGTATACAAAGAGAAATTAAAAATAT
TGCCATAAGAGCTAAAATAGATAAATCTATTTATCCACACCTATTTAGGCACTCTTTTGCTACACATAAGTTAAATTCAG
GAATGCCATTGCCAGTTATACAGCATCTCATGGGACATGAAAATCCATCTACTACACAGGTATACGCAGAATTAAGTGAA
GAAAATGTAATGCATGAATATAAAAAAATATCTTAA

Upstream 100 bases:

>100_bases
AGGTCTTTAAAGAAAAACCAAGATAAGGAAGTAAAAATAAAAAAATAAAATTATAAGAGACATTATAACGTTTGTCTCAG
TGGTGATAGGAGGGAAAAAG

Downstream 100 bases:

>100_bases
GGAGTGTAACTATGGTTAAAATGAAAGGAAAAGTAAGAGTACTTATATTACCATATAAAGATTTTAAACATAGAATTAGG
CTTACTAAGTATTATGAAAA

Product: phage integrase family integrase/recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MCNTSSKEEVVIKLVGRLSLEFPEIDQLKVRSIAEEVLYKYHVLPQETALVASDIEEKISIYLAAKKLDGLSLKTLKNYK
YNLAIFADYLRKPLATINAMDLRMFLAQRCKHMKASSVNGQISILKSFFGWLHMEEYIPKNPSLKLKQTKQPKRVRHALN
EEEIEILRQACETDREKALIEFLISTGCRLSEVIGVNKTDIDWNEMSLFVIGKGDKERKVYFNTKAKILLKKYLLTRSDE
NIALFVTSKKPHNRLGGRSIQREIKNIAIRAKIDKSIYPHLFRHSFATHKLNSGMPLPVIQHLMGHENPSTTQVYAELSE
ENVMHEYKKIS

Sequences:

>Translated_331_residues
MCNTSSKEEVVIKLVGRLSLEFPEIDQLKVRSIAEEVLYKYHVLPQETALVASDIEEKISIYLAAKKLDGLSLKTLKNYK
YNLAIFADYLRKPLATINAMDLRMFLAQRCKHMKASSVNGQISILKSFFGWLHMEEYIPKNPSLKLKQTKQPKRVRHALN
EEEIEILRQACETDREKALIEFLISTGCRLSEVIGVNKTDIDWNEMSLFVIGKGDKERKVYFNTKAKILLKKYLLTRSDE
NIALFVTSKKPHNRLGGRSIQREIKNIAIRAKIDKSIYPHLFRHSFATHKLNSGMPLPVIQHLMGHENPSTTQVYAELSE
ENVMHEYKKIS
>Mature_331_residues
MCNTSSKEEVVIKLVGRLSLEFPEIDQLKVRSIAEEVLYKYHVLPQETALVASDIEEKISIYLAAKKLDGLSLKTLKNYK
YNLAIFADYLRKPLATINAMDLRMFLAQRCKHMKASSVNGQISILKSFFGWLHMEEYIPKNPSLKLKQTKQPKRVRHALN
EEEIEILRQACETDREKALIEFLISTGCRLSEVIGVNKTDIDWNEMSLFVIGKGDKERKVYFNTKAKILLKKYLLTRSDE
NIALFVTSKKPHNRLGGRSIQREIKNIAIRAKIDKSIYPHLFRHSFATHKLNSGMPLPVIQHLMGHENPSTTQVYAELSE
ENVMHEYKKIS

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=282, Percent_Identity=33.6879432624113, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1790244, Length=290, Percent_Identity=29.6551724137931, Blast_Score=125, Evalue=3e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 38161; Mature: 38161

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCNTSSKEEVVIKLVGRLSLEFPEIDQLKVRSIAEEVLYKYHVLPQETALVASDIEEKIS
CCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHE
IYLAAKKLDGLSLKTLKNYKYNLAIFADYLRKPLATINAMDLRMFLAQRCKHMKASSVNG
EEEEEECCCCCCHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
QISILKSFFGWLHMEEYIPKNPSLKLKQTKQPKRVRHALNEEEIEILRQACETDREKALI
HHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHCCHHHHHHHHHHHHCHHHHHHH
EFLISTGCRLSEVIGVNKTDIDWNEMSLFVIGKGDKERKVYFNTKAKILLKKYLLTRSDE
HHHHHCCCCHHHHHCCCCCCCCCCCEEEEEEECCCCCCEEEECCHHHHHHHHHHHHCCCC
NIALFVTSKKPHNRLGGRSIQREIKNIAIRAKIDKSIYPHLFRHSFATHKLNSGMPLPVI
CEEEEEECCCCCCCCCCHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHCCCCCCHHHH
QHLMGHENPSTTQVYAELSEENVMHEYKKIS
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MCNTSSKEEVVIKLVGRLSLEFPEIDQLKVRSIAEEVLYKYHVLPQETALVASDIEEKIS
CCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHE
IYLAAKKLDGLSLKTLKNYKYNLAIFADYLRKPLATINAMDLRMFLAQRCKHMKASSVNG
EEEEEECCCCCCHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
QISILKSFFGWLHMEEYIPKNPSLKLKQTKQPKRVRHALNEEEIEILRQACETDREKALI
HHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHCCHHHHHHHHHHHHCHHHHHHH
EFLISTGCRLSEVIGVNKTDIDWNEMSLFVIGKGDKERKVYFNTKAKILLKKYLLTRSDE
HHHHHCCCCHHHHHCCCCCCCCCCCEEEEEEECCCCCCEEEECCHHHHHHHHHHHHCCCC
NIALFVTSKKPHNRLGGRSIQREIKNIAIRAKIDKSIYPHLFRHSFATHKLNSGMPLPVI
CEEEEEECCCCCCCCCCHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHCCCCCCHHHH
QHLMGHENPSTTQVYAELSEENVMHEYKKIS
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11823852 [H]