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The map label for this gene is rnpA

Identifier: 152977686

GI number: 152977686

Start: 4086422

End: 4086769

Strand: Reverse

Name: rnpA

Synonym: Bcer98_4027

Alternate gene names: 152977686

Gene position: 4086769-4086422 (Counterclockwise)

Preceding gene: 152977687

Following gene: 152977685

Centisome position: 99.99

GC content: 34.48

Gene sequence:

>348_bases
ATGAAGAAAAAGAATCGTATTAAAAAAAATGATGAATTTCAGGCCGTTTTTCAAAAAGGAAGATCTAGTGCCAATCGTCA
GTTTGTTATCTACCAATTAGATAAGGAAACACAACCATACTTTCGAATCGGTCTTTCTGTGAGTAAGAAAATCGGGAATG
CAGTAGTTCGCAATCGGATTAAACGTATGATTCGTCAATCCATTACAGAATTAAAAGATGAGATAGATTCTGGGAAGGAT
TTTGTTATAATAGCAAGGAAGCCTTGTGCAGAGATGACATACGAAGAGTTTAAGAAAAGCTTAATTCATGCCTTCAAACG
TTCAGGGATAAAAATTACAAACAAGTAG

Upstream 100 bases:

>100_bases
GGAAGAAAAGTATTATCTGCGTAGACCACTGAACGATCAGTGGTCTTTTTTTCTAGCCGTAATGAATTTCCACTGATGAA
ATACAGGAGTGTCAATTGAT

Downstream 100 bases:

>100_bases
CGTAGGAAAGGGAAAATGAATTACACTATATACATACCGAAACAAGGAGGAGCAGGCTGTGAAAAAGAAGATAGGCTTAC
TTGCCATGGTTATCGCTTTG

Product: ribonuclease P

Products: NA

Alternate protein names: RNase P protein; RNaseP protein; Protein C5

Number of amino acids: Translated: 115; Mature: 115

Protein sequence:

>115_residues
MKKKNRIKKNDEFQAVFQKGRSSANRQFVIYQLDKETQPYFRIGLSVSKKIGNAVVRNRIKRMIRQSITELKDEIDSGKD
FVIIARKPCAEMTYEEFKKSLIHAFKRSGIKITNK

Sequences:

>Translated_115_residues
MKKKNRIKKNDEFQAVFQKGRSSANRQFVIYQLDKETQPYFRIGLSVSKKIGNAVVRNRIKRMIRQSITELKDEIDSGKD
FVIIARKPCAEMTYEEFKKSLIHAFKRSGIKITNK
>Mature_115_residues
MKKKNRIKKNDEFQAVFQKGRSSANRQFVIYQLDKETQPYFRIGLSVSKKIGNAVVRNRIKRMIRQSITELKDEIDSGKD
FVIIARKPCAEMTYEEFKKSLIHAFKRSGIKITNK

Specific function: RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-lead

COG id: COG0594

COG function: function code J; RNase P protein component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rnpA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNPA_BACCN (A7GVQ0)

Other databases:

- EMBL:   CP000764
- RefSeq:   YP_001377203.1
- ProteinModelPortal:   A7GVQ0
- SMR:   A7GVQ0
- STRING:   A7GVQ0
- EnsemblBacteria:   EBBACT00000037005
- GeneID:   5343745
- GenomeReviews:   CP000764_GR
- KEGG:   bcy:Bcer98_4027
- eggNOG:   COG0594
- GeneTree:   EBGT00050000001736
- HOGENOM:   HBG728160
- OMA:   DEFQAVF
- ProtClustDB:   PRK00499
- BioCyc:   BCER315749:BCER98_4027-MONOMER
- HAMAP:   MF_00227
- InterPro:   IPR020568
- InterPro:   IPR014721
- InterPro:   IPR000100
- InterPro:   IPR020539
- Gene3D:   G3DSA:3.30.230.10
- ProDom:   PD003629
- TIGRFAMs:   TIGR00188

Pfam domain/function: PF00825 Ribonuclease_P; SSF54211 Ribosomal_S5_D2-typ_fold

EC number: =3.1.26.5

Molecular weight: Translated: 13499; Mature: 13499

Theoretical pI: Translated: 11.00; Mature: 11.00

Prosite motif: PS00648 RIBONUCLEASE_P

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKNRIKKNDEFQAVFQKGRSSANRQFVIYQLDKETQPYFRIGLSVSKKIGNAVVRNRI
CCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
KRMIRQSITELKDEIDSGKDFVIIARKPCAEMTYEEFKKSLIHAFKRSGIKITNK
HHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCC
>Mature Secondary Structure
MKKKNRIKKNDEFQAVFQKGRSSANRQFVIYQLDKETQPYFRIGLSVSKKIGNAVVRNRI
CCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
KRMIRQSITELKDEIDSGKDFVIIARKPCAEMTYEEFKKSLIHAFKRSGIKITNK
HHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA