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The map label for this gene is jag [H]

Identifier: 152977684

GI number: 152977684

Start: 4084982

End: 4085599

Strand: Reverse

Name: jag [H]

Synonym: Bcer98_4025

Alternate gene names: 152977684

Gene position: 4085599-4084982 (Counterclockwise)

Preceding gene: 152977685

Following gene: 152977683

Centisome position: 99.97

GC content: 35.6

Gene sequence:

>618_bases
GTGAGTATAATTACTGCTAAAGGACAAACCGTCGAGCTGGCAGTACAAGATGCTTTAAGGCAATTAAAAGTTTCAAAAGA
ACAAGTAGATATAAATATTATCGACGAAGGCAAGCGAGGATTTCTAGGCTTGATTGGGAATCGACCTGCTGTGGTAGAGG
TGATCGTAAAAAAAGATCCAGTCCAGGAAGCTGAAGAGTATTTACGTAATGTCGTTCAGGCGATGGGAGTGGATGTAGCG
ATTACAAAAAAAGTAAAGGGAAGAGATGTGGAATTCATTCTTTCTGGAAAAAATGTAGGTGTTTTAATTGGAAAAAGAGG
TCATACTTTAAATTCTTTACAATATTTAACAAATCTTGTTGCGAATCGTAGTACAAAGCAATATGTTGGTATAACAATTG
ATGCTGAAAACTATCGTAGTAAGCGAAAAGATACATTAGAATCTCTTGCTTATCGATTAGCAAAACAAGTAGCAAGTACA
AAGAAAAATGTTGTATTAGAGCCAATGCCTTCTTTTGAAAGAAAAATTATCCATCAAGCATTAGCGAATCATCCAAATGT
TATTACATCTTCTGAGGGAAAAGATCCGCATCGGCATGTTGTAATATCTCCCAAATAA

Upstream 100 bases:

>100_bases
TATCTTTATACTGGGTAGTTGGTAACATCTTTGGTATCGCTCAAATGTATATGATCAAAGGCCCTGAAATTAAGGGTAGT
AAGGCAGGAGGATCAAGCAA

Downstream 100 bases:

>100_bases
CCGGTCACTCATTTGAGTACCGGTTTTTTCTATGAGTTTGTTCTAACAAGTTTTCATGTATCAAAATAAGAGGTTTATAT
GCAGATTTGACTGACGAAAA

Product: single-stranded nucleic acid binding R3H domain-containing protein

Products: NA

Alternate protein names: SpoIIIJ-associated protein [H]

Number of amino acids: Translated: 205; Mature: 204

Protein sequence:

>205_residues
MSIITAKGQTVELAVQDALRQLKVSKEQVDINIIDEGKRGFLGLIGNRPAVVEVIVKKDPVQEAEEYLRNVVQAMGVDVA
ITKKVKGRDVEFILSGKNVGVLIGKRGHTLNSLQYLTNLVANRSTKQYVGITIDAENYRSKRKDTLESLAYRLAKQVAST
KKNVVLEPMPSFERKIIHQALANHPNVITSSEGKDPHRHVVISPK

Sequences:

>Translated_205_residues
MSIITAKGQTVELAVQDALRQLKVSKEQVDINIIDEGKRGFLGLIGNRPAVVEVIVKKDPVQEAEEYLRNVVQAMGVDVA
ITKKVKGRDVEFILSGKNVGVLIGKRGHTLNSLQYLTNLVANRSTKQYVGITIDAENYRSKRKDTLESLAYRLAKQVAST
KKNVVLEPMPSFERKIIHQALANHPNVITSSEGKDPHRHVVISPK
>Mature_204_residues
SIITAKGQTVELAVQDALRQLKVSKEQVDINIIDEGKRGFLGLIGNRPAVVEVIVKKDPVQEAEEYLRNVVQAMGVDVAI
TKKVKGRDVEFILSGKNVGVLIGKRGHTLNSLQYLTNLVANRSTKQYVGITIDAENYRSKRKDTLESLAYRLAKQVASTK
KNVVLEPMPSFERKIIHQALANHPNVITSSEGKDPHRHVVISPK

Specific function: Unknown

COG id: COG1847

COG function: function code R; Predicted RNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 R3H domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004087
- InterPro:   IPR015946
- InterPro:   IPR001374 [H]

Pfam domain/function: PF01424 R3H [H]

EC number: NA

Molecular weight: Translated: 22729; Mature: 22597

Theoretical pI: Translated: 10.39; Mature: 10.39

Prosite motif: PS51061 R3H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIITAKGQTVELAVQDALRQLKVSKEQVDINIIDEGKRGFLGLIGNRPAVVEVIVKKDP
CCEEECCCCEEEHHHHHHHHHHHCCHHHEEEEEEECCCCCEEEECCCCCEEEEEEECCCC
VQEAEEYLRNVVQAMGVDVAITKKVKGRDVEFILSGKNVGVLIGKRGHTLNSLQYLTNLV
HHHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECCCEEEEEECCCCCHHHHHHHHHHH
ANRSTKQYVGITIDAENYRSKRKDTLESLAYRLAKQVASTKKNVVLEPMPSFERKIIHQA
HCCCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHH
LANHPNVITSSEGKDPHRHVVISPK
HHCCCCEEECCCCCCCCCEEEEECC
>Mature Secondary Structure 
SIITAKGQTVELAVQDALRQLKVSKEQVDINIIDEGKRGFLGLIGNRPAVVEVIVKKDP
CEEECCCCEEEHHHHHHHHHHHCCHHHEEEEEEECCCCCEEEECCCCCEEEEEEECCCC
VQEAEEYLRNVVQAMGVDVAITKKVKGRDVEFILSGKNVGVLIGKRGHTLNSLQYLTNLV
HHHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECCCEEEEEECCCCCHHHHHHHHHHH
ANRSTKQYVGITIDAENYRSKRKDTLESLAYRLAKQVASTKKNVVLEPMPSFERKIIHQA
HCCCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHH
LANHPNVITSSEGKDPHRHVVISPK
HHCCCCEEECCCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1487728; 1552862; 7584024; 9384377 [H]