Click here to switch to the map view.

The map label for this gene is rpoE [H]

Identifier: 152977525

GI number: 152977525

Start: 3918759

End: 3919268

Strand: Reverse

Name: rpoE [H]

Synonym: Bcer98_3860

Alternate gene names: 152977525

Gene position: 3919268-3918759 (Counterclockwise)

Preceding gene: 152977526

Following gene: 152977524

Centisome position: 95.9

GC content: 36.86

Gene sequence:

>510_bases
GTGGATTTTAAGCAATATTCTCCAGAAGAGCTACAAGAATTTTCCATGATTGAAGTTGTACATAGTGTGTTAGAGGACAA
AAAACAAGCAACGTCATTCCAGGATTTAGTTCAAGAAGTTGCTCAAGTACTTGGATTATCTCAAGAGCAAGTGAATGCGC
GAATTGCACAATTTTATACAGATTTAAATATCGATGGACGTTTCATCAATTTAGGAGAAAATCGTTGGGGCCTTCGCACT
TGGTATCCATATGAACAAATTGATGAAGAAATCTTACCTCAACCTAAAGCTAAGAAGAAACGTAAAGTTGAAGAAGATGA
CGACTTTGATGATTACATTGAAGACGAGGATGACTTCAACGATTTAGATGAAGAAGATGAGGAAGACATCGATGATTTAG
ACGAGGTTCTTGATGAAGACGATGATCTTGATGATTTAGATGAAGACGATGATTTTGGTGATGACGAACTTGAGTATGAT
GAAACTGAAGAGGAAGATGAAGAGCTGTAG

Upstream 100 bases:

>100_bases
AGCATATTTGCTGGAGTTTTGTTTATAATGAATAGTATGGATTTTTTTAAATAGGCCGTTATATATAGGATTATATTTTT
AGAAAGGAAGTGCCGCATAA

Downstream 100 bases:

>100_bases
TCCTTGACTTTTCATTATCGTCCATGTAGAATCATTTTTGGGCTCTTTAAAAAAGGACGATCATACTTTTTAAGTGTAAA
TATAAAAGAAAATTGCTCCC

Product: DNA-directed RNA polymerase subunit delta

Products: diphosphate; RNAn+1

Alternate protein names: RNAP delta factor [H]

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MDFKQYSPEELQEFSMIEVVHSVLEDKKQATSFQDLVQEVAQVLGLSQEQVNARIAQFYTDLNIDGRFINLGENRWGLRT
WYPYEQIDEEILPQPKAKKKRKVEEDDDFDDYIEDEDDFNDLDEEDEEDIDDLDEVLDEDDDLDDLDEDDDFGDDELEYD
ETEEEDEEL

Sequences:

>Translated_169_residues
MDFKQYSPEELQEFSMIEVVHSVLEDKKQATSFQDLVQEVAQVLGLSQEQVNARIAQFYTDLNIDGRFINLGENRWGLRT
WYPYEQIDEEILPQPKAKKKRKVEEDDDFDDYIEDEDDFNDLDEEDEEDIDDLDEVLDEDDDLDDLDEDDDFGDDELEYD
ETEEEDEEL
>Mature_169_residues
MDFKQYSPEELQEFSMIEVVHSVLEDKKQATSFQDLVQEVAQVLGLSQEQVNARIAQFYTDLNIDGRFINLGENRWGLRT
WYPYEQIDEEILPQPKAKKKRKVEEDDDFDDYIEDEDDFNDLDEEDEEDIDDLDEVLDEDDDLDDLDEDDDFGDDELEYD
ETEEEDEEL

Specific function: Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis

COG id: COG3343

COG function: function code K; DNA-directed RNA polymerase, delta subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rpoE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007759 [H]

Pfam domain/function: PF05066 RNA_pol_delta [H]

EC number: 2.7.7.6

Molecular weight: Translated: 20111; Mature: 20111

Theoretical pI: Translated: 3.45; Mature: 3.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFKQYSPEELQEFSMIEVVHSVLEDKKQATSFQDLVQEVAQVLGLSQEQVNARIAQFYT
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
DLNIDGRFINLGENRWGLRTWYPYEQIDEEILPQPKAKKKRKVEEDDDFDDYIEDEDDFN
HCCCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCCHHHHHCCCCCCCCHHHHCCCCCCC
DLDEEDEEDIDDLDEVLDEDDDLDDLDEDDDFGDDELEYDETEEEDEEL
CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDFKQYSPEELQEFSMIEVVHSVLEDKKQATSFQDLVQEVAQVLGLSQEQVNARIAQFYT
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
DLNIDGRFINLGENRWGLRTWYPYEQIDEEILPQPKAKKKRKVEEDDDFDDYIEDEDDFN
HCCCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCCHHHHHCCCCCCCCHHHHCCCCCCC
DLDEEDEEDIDDLDEVLDEDDDLDDLDEDDDFGDDELEYDETEEEDEEL
CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: nucleoside triphosphate; RNAn

Specific reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1)

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA