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The map label for this gene is lytT [H]

Identifier: 152977472

GI number: 152977472

Start: 3864702

End: 3865709

Strand: Reverse

Name: lytT [H]

Synonym: Bcer98_3804

Alternate gene names: 152977472

Gene position: 3865709-3864702 (Counterclockwise)

Preceding gene: 152977473

Following gene: 152977471

Centisome position: 94.58

GC content: 34.82

Gene sequence:

>1008_bases
ATGGCGTTACTCGAGCTAAAACAACTAGGGAAGACAAATCAGTTGCCGGTTATAGATATGAGCGTTGAAAAAGGACAATG
CGTTGTACTGCAATGTAATAATCATACTGCTAAAGTATTGCACCGCATTATCATTGGGGAAGAAGATGCTTCTTCCGGAA
CGGTATTATTTGAAGAAGAGCCAATTCGCAAAAGTGCATATTCCCGCATTGGATTTTGTTTTTTAAAAGATGAAGCATAT
AACCGTTTGAAAGTGAAAGAATATCTTTCCTTTTTGTCTGGATTGTATGACTCAAATATTGACATAGAAGAAATTGTAAA
ATGCGTTGGATTGCTCGATAAGTTGGATACAAAGATAGAGAAGCTATCATTTTCTGAAAAGCGTCGCCTTCATATTGGGA
GAGTGATGGTTCATAATCCGGATTTAATTATTTTAGAAGAACCAGAGCAAAATGTAGATATTGAAAGTACAATTATCATT
CGCAAGGCAATTATGAAGATGAAAGAGAACGGAAAAGCCATTTTTATTACATCGTCCTTTTTATCTGATGCACTCTCCTT
AACGGAGGATGTATACATATTAAATCAAGAAGGTGTAAAAAAGATTGAATTTGAACAGGAAGAAGTAGAAGAGAAAGAGG
AAGAAAAAGGGGTTCAAATGATTCCGCAAATGAAATTGGAAAGAATTCCGGCAAAAGTGAACGACAAAATTATTTTGTTG
GATCCGATGGAGATTCATTTTATTGAAACGCAAAGTGGTACAACTCATATTCATGTTCATGAAGAAGATTTTATATGTAC
ATTAACATTAAGTGAGTTAGAAAATAGATTAAAAGGATTCGGTTTCTTTCGATGTCACCGATCGTACCTTGTGAACTTAC
AACGTGTAAGAGAAGTCATCACTTGGACGCGAAATAGTTTCAGTTTAATTTTAGATGATGATCGCAAAAGTTCCATTCCG
CTTTCAAAAGGAAGAATGGATGAATTGAAAGATGTCATTGGACTATAA

Upstream 100 bases:

>100_bases
AGTTCATCTACATGAGCTCCTTTTTGTAATGGGAAAATATCATAATTTTCCGTGTATTGTTTGATATAATAAGATAAAAA
ACTCATCTGGAGGAGAAAAG

Downstream 100 bases:

>100_bases
ATGATGCTCTAGTAGAGCCGAAATAGGATGCATTCACCGGTAAAAATACTCCTTTTACCGGTATTTTACTGCGTAAACCT
TTTGTTTTTCATATGATTAG

Product: LytTr DNA-binding region

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 334

Protein sequence:

>335_residues
MALLELKQLGKTNQLPVIDMSVEKGQCVVLQCNNHTAKVLHRIIIGEEDASSGTVLFEEEPIRKSAYSRIGFCFLKDEAY
NRLKVKEYLSFLSGLYDSNIDIEEIVKCVGLLDKLDTKIEKLSFSEKRRLHIGRVMVHNPDLIILEEPEQNVDIESTIII
RKAIMKMKENGKAIFITSSFLSDALSLTEDVYILNQEGVKKIEFEQEEVEEKEEEKGVQMIPQMKLERIPAKVNDKIILL
DPMEIHFIETQSGTTHIHVHEEDFICTLTLSELENRLKGFGFFRCHRSYLVNLQRVREVITWTRNSFSLILDDDRKSSIP
LSKGRMDELKDVIGL

Sequences:

>Translated_335_residues
MALLELKQLGKTNQLPVIDMSVEKGQCVVLQCNNHTAKVLHRIIIGEEDASSGTVLFEEEPIRKSAYSRIGFCFLKDEAY
NRLKVKEYLSFLSGLYDSNIDIEEIVKCVGLLDKLDTKIEKLSFSEKRRLHIGRVMVHNPDLIILEEPEQNVDIESTIII
RKAIMKMKENGKAIFITSSFLSDALSLTEDVYILNQEGVKKIEFEQEEVEEKEEEKGVQMIPQMKLERIPAKVNDKIILL
DPMEIHFIETQSGTTHIHVHEEDFICTLTLSELENRLKGFGFFRCHRSYLVNLQRVREVITWTRNSFSLILDDDRKSSIP
LSKGRMDELKDVIGL
>Mature_334_residues
ALLELKQLGKTNQLPVIDMSVEKGQCVVLQCNNHTAKVLHRIIIGEEDASSGTVLFEEEPIRKSAYSRIGFCFLKDEAYN
RLKVKEYLSFLSGLYDSNIDIEEIVKCVGLLDKLDTKIEKLSFSEKRRLHIGRVMVHNPDLIILEEPEQNVDIESTIIIR
KAIMKMKENGKAIFITSSFLSDALSLTEDVYILNQEGVKKIEFEQEEVEEKEEEKGVQMIPQMKLERIPAKVNDKIILLD
PMEIHFIETQSGTTHIHVHEEDFICTLTLSELENRLKGFGFFRCHRSYLVNLQRVREVITWTRNSFSLILDDDRKSSIPL
SKGRMDELKDVIGL

Specific function: Member of the two-component regulatory system lytS/lytT that probably regulates genes involved in cell wall metabolism [H]

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788724, Length=184, Percent_Identity=23.9130434782609, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1790467, Length=230, Percent_Identity=24.7826086956522, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 38584; Mature: 38453

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: PS50930 HTH_LYTTR ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALLELKQLGKTNQLPVIDMSVEKGQCVVLQCNNHTAKVLHRIIIGEEDASSGTVLFEEE
CCCHHHHHCCCCCCCEEEEEECCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCEEEEECC
PIRKSAYSRIGFCFLKDEAYNRLKVKEYLSFLSGLYDSNIDIEEIVKCVGLLDKLDTKIE
CHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
KLSFSEKRRLHIGRVMVHNPDLIILEEPEQNVDIESTIIIRKAIMKMKENGKAIFITSSF
HHCCCHHHCEEEEEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHH
LSDALSLTEDVYILNQEGVKKIEFEQEEVEEKEEEKGVQMIPQMKLERIPAKVNDKIILL
HHHHHHHHHCEEEECCCCCEECCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCEEEEE
DPMEIHFIETQSGTTHIHVHEEDFICTLTLSELENRLKGFGFFRCHRSYLVNLQRVREVI
CCCEEEEEEECCCEEEEEEECCCEEEEEEHHHHHHHHHHCCHHEEHHHHHHHHHHHHHHH
TWTRNSFSLILDDDRKSSIPLSKGRMDELKDVIGL
HHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHCC
>Mature Secondary Structure 
ALLELKQLGKTNQLPVIDMSVEKGQCVVLQCNNHTAKVLHRIIIGEEDASSGTVLFEEE
CCHHHHHCCCCCCCEEEEEECCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCEEEEECC
PIRKSAYSRIGFCFLKDEAYNRLKVKEYLSFLSGLYDSNIDIEEIVKCVGLLDKLDTKIE
CHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
KLSFSEKRRLHIGRVMVHNPDLIILEEPEQNVDIESTIIIRKAIMKMKENGKAIFITSSF
HHCCCHHHCEEEEEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHH
LSDALSLTEDVYILNQEGVKKIEFEQEEVEEKEEEKGVQMIPQMKLERIPAKVNDKIILL
HHHHHHHHHCEEEECCCCCEECCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCEEEEE
DPMEIHFIETQSGTTHIHVHEEDFICTLTLSELENRLKGFGFFRCHRSYLVNLQRVREVI
CCCEEEEEEECCCEEEEEEECCCEEEEEEHHHHHHHHHHCCHHEEHHHHHHHHHHHHHHH
TWTRNSFSLILDDDRKSSIPLSKGRMDELKDVIGL
HHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12235376 [H]