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The map label for this gene is yqiR [H]

Identifier: 152976572

GI number: 152976572

Start: 2934249

End: 2936321

Strand: Reverse

Name: yqiR [H]

Synonym: Bcer98_2861

Alternate gene names: 152976572

Gene position: 2936321-2934249 (Counterclockwise)

Preceding gene: 152976574

Following gene: 152976571

Centisome position: 71.84

GC content: 34.68

Gene sequence:

>2073_bases
ATGAAACAAAAAGTTCTCATTATCGGAGCAGGTGAAGGTGGAAGTACAATATTAAGTTTGTTGAGACGTTCAAATATATT
TGAAATGATTGGGGTTATTGATATAAATCCAAATGCGAAGGGATTGCAACTTGCAAAAGAGCAATCAATTCCAACTGGAG
ATCATATAGAGTCTTTTTTAAAAAAACATGTGGACGTCATTTTTGATATGACGGGGGATGAGCATCTACATAAAGTTCTT
TTAGAAAAAAAGCATGAACATACATTACTAATACCGGGAAATATTGCTAAGATCGTTACGAAACTCGCTCATGAGAAAGA
AGATTTAATTGAAAAATTAAAAGCTCAAACGCAGCAGAAAGATTTGATTTTAAATTCTACACATGATGGTATGATCGTTG
TTAATAAAGAAGGGATTATAAAATTATTTAATAAAAGTGCAGCGCGAATGACAGGTTATACAACAAGTGAAGCTACTGGA
AAATATATTTTAGAAGTAATTCCAACAAGTAAATTACTTCGAATTTTACGGACAAAGCAAATCGAAGTAAATCAGGAACT
TACATTGGATAACGGAAAAAAGATTATTACGACGCGCATTCCGATTTTGAAAGAGGATGGAGAAGTTCAAGGAGCATTTG
CCGTTTTTAAAGATATTACTGAAGTTGTAAACTTGGCCGAGGAAGTTACGGATTTAAAAGAAATACAAACATTACTAGAA
GCAATTATTTATTCATCTGAAGAAGCAATTTCTGTTGTAGATGAGAAAGGGAGAGGGATTGTTATAAATCCTGCCTATAC
AAAATTAACAGGTCTGTCAGAAGAAGATATAATTGGAAAACCTGCAACGACTGACATTGTAGAGGGAGAGAGTATGCATA
TGAAGGTACTTCGTACGCGTAGGGCTGTGCGGGGAATTCATATGAAAATTGGACAAAAAAAGCGAGATGTAATTGTAAAT
GTTGCCCCGGTTATTGTTGATGGAATATTAAAAGGTAGTGTAGGGGTGATTCGTGACGTCTCAGAAATACAAAAATTAAC
AAATGATTTACATCGAGCGAGACAAATTATTCGAACACTCGAAGCAAAATATTCTTTTGATGATATTGTTGGAGTTTCGG
ATGAAATAATGGCGGCGATAGAGCAAGCGAAACTTGGGGCGAATACGCCAGCGACAGTATTGCTTCGAGGAGAATCAGGA
ACAGGGAAAGAATTATTTGCGCATGCGATTCATAATGGTAGTAATCGAAAATACAATAAATTTGTTCGTGTAAACTGCGC
TGCAATTTCAGACAATCTGTTAGAAAGCGAATTGTTTGGCTATGAAGAAGGGGCGTTTTCTGGTGCAAAAAGGGGTGGGA
AACGAGGACTCTTTGAAGAAGCGAACAATGGAAGTATATTTTTAGATGAGATTGGAGAATTATCTGCTAGTACACAAGCG
AAATTACTTCGAGTGCTACAAGAAAAAGAAATTGTAAAAGTTGGAGGAACAAAGGCGATTCCAATTAATGTAAGAGTGAT
TGCTGCAACTCATGTAAATTTAGAAAAAGCGATTTTAGAAGGAGAATTTCGAGAAGATTTATATTATCGTTTAAATAAAA
TTCCAATTCAAATTCCGTCTCTTCGCCAACGGAAAGAGGATATTCCTTTTATCGCAGAAAGATTAATTCAAAAGATTAAT
CAAGATTATGGGCGTAATGTAGAGGGAGTAACAAAAGCAGCAATTGAGTATTTACAATCATATGATTGGCCTGGAAATGT
GCGGGAGCTGGAAAATATTTTGGGACGAGCGATTATTTTTATGAGTTACAATGAAGTTTATATTGATGTACATCATTTAC
CTTCTTTGCATAAAGATGAACAAGTTGAATTAAAGGCGAATCGTTTATTACCAGAATTAGAAGAAAAGTCTCTTGAACAT
TTAGTTACAGAGTTTGAGGGGAATATTATCCGGGAATATTTAGATAAATTTAATGGCAATAAGACAAAAACGGCAAAAGC
TTTAGGTATTTCGGTACGAAACTTGTATTATAAGTTAGAAAAATACGAGTCTGCAAAAAATAGCATGCAATAA

Upstream 100 bases:

>100_bases
ATGATGAAATATACAATGGGTGTTTGTCAAGAGAAAGAAGAGCGAGTAAGATAAAGGTGTGAAAAAGCTTGCAGAGGTAC
TTCGAAAGGAAGTGTAATGT

Downstream 100 bases:

>100_bases
ATTGCACACTATGCAATTTATTGCATGGTGTATAAAAAACGACAAATTAGGACAGAATATTCTGTTATTTTTTAGATTGT
TGATTCTACTATGTTTTGTA

Product: sigma-54 dependent trancsriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 690; Mature: 690

Protein sequence:

>690_residues
MKQKVLIIGAGEGGSTILSLLRRSNIFEMIGVIDINPNAKGLQLAKEQSIPTGDHIESFLKKHVDVIFDMTGDEHLHKVL
LEKKHEHTLLIPGNIAKIVTKLAHEKEDLIEKLKAQTQQKDLILNSTHDGMIVVNKEGIIKLFNKSAARMTGYTTSEATG
KYILEVIPTSKLLRILRTKQIEVNQELTLDNGKKIITTRIPILKEDGEVQGAFAVFKDITEVVNLAEEVTDLKEIQTLLE
AIIYSSEEAISVVDEKGRGIVINPAYTKLTGLSEEDIIGKPATTDIVEGESMHMKVLRTRRAVRGIHMKIGQKKRDVIVN
VAPVIVDGILKGSVGVIRDVSEIQKLTNDLHRARQIIRTLEAKYSFDDIVGVSDEIMAAIEQAKLGANTPATVLLRGESG
TGKELFAHAIHNGSNRKYNKFVRVNCAAISDNLLESELFGYEEGAFSGAKRGGKRGLFEEANNGSIFLDEIGELSASTQA
KLLRVLQEKEIVKVGGTKAIPINVRVIAATHVNLEKAILEGEFREDLYYRLNKIPIQIPSLRQRKEDIPFIAERLIQKIN
QDYGRNVEGVTKAAIEYLQSYDWPGNVRELENILGRAIIFMSYNEVYIDVHHLPSLHKDEQVELKANRLLPELEEKSLEH
LVTEFEGNIIREYLDKFNGNKTKTAKALGISVRNLYYKLEKYESAKNSMQ

Sequences:

>Translated_690_residues
MKQKVLIIGAGEGGSTILSLLRRSNIFEMIGVIDINPNAKGLQLAKEQSIPTGDHIESFLKKHVDVIFDMTGDEHLHKVL
LEKKHEHTLLIPGNIAKIVTKLAHEKEDLIEKLKAQTQQKDLILNSTHDGMIVVNKEGIIKLFNKSAARMTGYTTSEATG
KYILEVIPTSKLLRILRTKQIEVNQELTLDNGKKIITTRIPILKEDGEVQGAFAVFKDITEVVNLAEEVTDLKEIQTLLE
AIIYSSEEAISVVDEKGRGIVINPAYTKLTGLSEEDIIGKPATTDIVEGESMHMKVLRTRRAVRGIHMKIGQKKRDVIVN
VAPVIVDGILKGSVGVIRDVSEIQKLTNDLHRARQIIRTLEAKYSFDDIVGVSDEIMAAIEQAKLGANTPATVLLRGESG
TGKELFAHAIHNGSNRKYNKFVRVNCAAISDNLLESELFGYEEGAFSGAKRGGKRGLFEEANNGSIFLDEIGELSASTQA
KLLRVLQEKEIVKVGGTKAIPINVRVIAATHVNLEKAILEGEFREDLYYRLNKIPIQIPSLRQRKEDIPFIAERLIQKIN
QDYGRNVEGVTKAAIEYLQSYDWPGNVRELENILGRAIIFMSYNEVYIDVHHLPSLHKDEQVELKANRLLPELEEKSLEH
LVTEFEGNIIREYLDKFNGNKTKTAKALGISVRNLYYKLEKYESAKNSMQ
>Mature_690_residues
MKQKVLIIGAGEGGSTILSLLRRSNIFEMIGVIDINPNAKGLQLAKEQSIPTGDHIESFLKKHVDVIFDMTGDEHLHKVL
LEKKHEHTLLIPGNIAKIVTKLAHEKEDLIEKLKAQTQQKDLILNSTHDGMIVVNKEGIIKLFNKSAARMTGYTTSEATG
KYILEVIPTSKLLRILRTKQIEVNQELTLDNGKKIITTRIPILKEDGEVQGAFAVFKDITEVVNLAEEVTDLKEIQTLLE
AIIYSSEEAISVVDEKGRGIVINPAYTKLTGLSEEDIIGKPATTDIVEGESMHMKVLRTRRAVRGIHMKIGQKKRDVIVN
VAPVIVDGILKGSVGVIRDVSEIQKLTNDLHRARQIIRTLEAKYSFDDIVGVSDEIMAAIEQAKLGANTPATVLLRGESG
TGKELFAHAIHNGSNRKYNKFVRVNCAAISDNLLESELFGYEEGAFSGAKRGGKRGLFEEANNGSIFLDEIGELSASTQA
KLLRVLQEKEIVKVGGTKAIPINVRVIAATHVNLEKAILEGEFREDLYYRLNKIPIQIPSLRQRKEDIPFIAERLIQKIN
QDYGRNVEGVTKAAIEYLQSYDWPGNVRELENILGRAIIFMSYNEVYIDVHHLPSLHKDEQVELKANRLLPELEEKSLEH
LVTEFEGNIIREYLDKFNGNKTKTAKALGISVRNLYYKLEKYESAKNSMQ

Specific function: Member Of The Two-Component Regulatory System Atos/Atoc Involved In The Transcriptional Regulation Of The Ato Genes For Acetoacetate Metabolism. Also An Inhibitor Of Polyamine Biosynthesis. [C]

COG id: COG3829

COG function: function code KT; Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1788550, Length=329, Percent_Identity=41.6413373860182, Blast_Score=262, Evalue=7e-71,
Organism=Escherichia coli, GI1790437, Length=313, Percent_Identity=43.7699680511182, Blast_Score=258, Evalue=7e-70,
Organism=Escherichia coli, GI1786524, Length=380, Percent_Identity=38.9473684210526, Blast_Score=251, Evalue=1e-67,
Organism=Escherichia coli, GI87082117, Length=311, Percent_Identity=42.443729903537, Blast_Score=250, Evalue=2e-67,
Organism=Escherichia coli, GI1789233, Length=464, Percent_Identity=33.1896551724138, Blast_Score=241, Evalue=1e-64,
Organism=Escherichia coli, GI1788905, Length=322, Percent_Identity=40.9937888198758, Blast_Score=240, Evalue=3e-64,
Organism=Escherichia coli, GI1789087, Length=239, Percent_Identity=47.2803347280335, Blast_Score=235, Evalue=7e-63,
Organism=Escherichia coli, GI1790299, Length=306, Percent_Identity=38.8888888888889, Blast_Score=209, Evalue=7e-55,
Organism=Escherichia coli, GI87082152, Length=319, Percent_Identity=37.9310344827586, Blast_Score=203, Evalue=3e-53,
Organism=Escherichia coli, GI1787583, Length=318, Percent_Identity=35.8490566037736, Blast_Score=192, Evalue=8e-50,
Organism=Escherichia coli, GI87081872, Length=321, Percent_Identity=34.2679127725857, Blast_Score=184, Evalue=1e-47,
Organism=Escherichia coli, GI1789828, Length=240, Percent_Identity=36.25, Blast_Score=138, Evalue=1e-33,
Organism=Escherichia coli, GI87081858, Length=506, Percent_Identity=23.5177865612648, Blast_Score=120, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR002197
- InterPro:   IPR016040
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR013767
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00989 PAS; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 77198; Mature: 77198

Theoretical pI: Translated: 7.19; Mature: 7.19

Prosite motif: PS50112 PAS ; PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQKVLIIGAGEGGSTILSLLRRSNIFEMIGVIDINPNAKGLQLAKEQSIPTGDHIESFL
CCCEEEEEECCCCHHHHHHHHHHCCHHHHHEEEECCCCCCCHHHHHHCCCCCHHHHHHHH
KKHVDVIFDMTGDEHLHKVLLEKKHEHTLLIPGNIAKIVTKLAHEKEDLIEKLKAQTQQK
HHHHHEEEECCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHC
DLILNSTHDGMIVVNKEGIIKLFNKSAARMTGYTTSEATGKYILEVIPTSKLLRILRTKQ
CEEEECCCCCEEEECCCCHHHHHCCHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHC
IEVNQELTLDNGKKIITTRIPILKEDGEVQGAFAVFKDITEVVNLAEEVTDLKEIQTLLE
EECCCEEECCCCCEEEEEECCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AIIYSSEEAISVVDEKGRGIVINPAYTKLTGLSEEDIIGKPATTDIVEGESMHMKVLRTR
HHHHCCCHHHHHHCCCCCEEEECCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
RAVRGIHMKIGQKKRDVIVNVAPVIVDGILKGSVGVIRDVSEIQKLTNDLHRARQIIRTL
HHHHHHHHHCCCCCCCEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
EAKYSFDDIVGVSDEIMAAIEQAKLGANTPATVLLRGESGTGKELFAHAIHNGSNRKYNK
HHCCCHHHHCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCE
FVRVNCAAISDNLLESELFGYEEGAFSGAKRGGKRGLFEEANNGSIFLDEIGELSASTQA
EEEEEEHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCEEEECHHCCCCHHHH
KLLRVLQEKEIVKVGGTKAIPINVRVIAATHVNLEKAILEGEFREDLYYRLNKIPIQIPS
HHHHHHHHHHHEEECCCEEEEEEEEEEEEECCCHHHHHHCCHHHHHHHHHHHCCCEECCC
LRQRKEDIPFIAERLIQKINQDYGRNVEGVTKAAIEYLQSYDWPGNVRELENILGRAIIF
HHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHEEEE
MSYNEVYIDVHHLPSLHKDEQVELKANRLLPELEEKSLEHLVTEFEGNIIREYLDKFNGN
EECCEEEEEEECCCCCCCCCCCEEHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCC
KTKTAKALGISVRNLYYKLEKYESAKNSMQ
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKQKVLIIGAGEGGSTILSLLRRSNIFEMIGVIDINPNAKGLQLAKEQSIPTGDHIESFL
CCCEEEEEECCCCHHHHHHHHHHCCHHHHHEEEECCCCCCCHHHHHHCCCCCHHHHHHHH
KKHVDVIFDMTGDEHLHKVLLEKKHEHTLLIPGNIAKIVTKLAHEKEDLIEKLKAQTQQK
HHHHHEEEECCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHC
DLILNSTHDGMIVVNKEGIIKLFNKSAARMTGYTTSEATGKYILEVIPTSKLLRILRTKQ
CEEEECCCCCEEEECCCCHHHHHCCHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHC
IEVNQELTLDNGKKIITTRIPILKEDGEVQGAFAVFKDITEVVNLAEEVTDLKEIQTLLE
EECCCEEECCCCCEEEEEECCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AIIYSSEEAISVVDEKGRGIVINPAYTKLTGLSEEDIIGKPATTDIVEGESMHMKVLRTR
HHHHCCCHHHHHHCCCCCEEEECCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
RAVRGIHMKIGQKKRDVIVNVAPVIVDGILKGSVGVIRDVSEIQKLTNDLHRARQIIRTL
HHHHHHHHHCCCCCCCEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
EAKYSFDDIVGVSDEIMAAIEQAKLGANTPATVLLRGESGTGKELFAHAIHNGSNRKYNK
HHCCCHHHHCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCE
FVRVNCAAISDNLLESELFGYEEGAFSGAKRGGKRGLFEEANNGSIFLDEIGELSASTQA
EEEEEEHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCEEEECHHCCCCHHHH
KLLRVLQEKEIVKVGGTKAIPINVRVIAATHVNLEKAILEGEFREDLYYRLNKIPIQIPS
HHHHHHHHHHHEEECCCEEEEEEEEEEEEECCCHHHHHHCCHHHHHHHHHHHCCCEECCC
LRQRKEDIPFIAERLIQKINQDYGRNVEGVTKAAIEYLQSYDWPGNVRELENILGRAIIF
HHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHEEEE
MSYNEVYIDVHHLPSLHKDEQVELKANRLLPELEEKSLEHLVTEFEGNIIREYLDKFNGN
EECCEEEEEEECCCCCCCCCCCEEHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCC
KTKTAKALGISVRNLYYKLEKYESAKNSMQ
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]