Click here to switch to the map view.

The map label for this gene is deoB [H]

Identifier: 152976497

GI number: 152976497

Start: 2866369

End: 2867556

Strand: Reverse

Name: deoB [H]

Synonym: Bcer98_2786

Alternate gene names: 152976497

Gene position: 2867556-2866369 (Counterclockwise)

Preceding gene: 152976498

Following gene: 152976496

Centisome position: 70.16

GC content: 37.29

Gene sequence:

>1188_bases
ATGATGCATAAATATAAACGTATTTTCCTAGTCGTAATGGATTCAGTGGGAATCGGAGAAGCACCAGATGCTGAAAAGTT
TGGCGATGTAGGAGCTGATACATTAGGACATATTGCGGAGCATATGAATGGATTGAATATGCCAAATATGGTGAAGTTAG
GACTTGGAAATATTCGTGAAATGAAAGGAATTTCTAAAGTAGAAAATCCACTTGGCTACTATACAAAAATGCAAGAAAAA
TCCACCGGGAAAGATACAATGACAGGTCATTGGGAAATTATGGGCCTTTACATTGATAAACCATTCCAAGTATTCCCTGA
AGGATTCCCAAAAGAATTAATTGATGAATTAGAGGCGAGAACAGGACGCAAAATTATTGGCAATAAGCCTGCTTCTGGAA
CTGCTATTCTTGATGAACTTGGCAAAGAACAAATGGAAACAGGCTCTTTAATTGTATATACTTCTGCCGACAGCGTATTA
CAAATTGCGGCTCATGAAGAAGTAGTACCGCTTGAAGAATTGTACAACATTTGTAAAATTGCACGTGAATTAACATTGGA
TGAAAAGTATATGGTAGGCCGCGTTATTGCACGTCCGTTCGTTGGTGAACCAGGAAACTTTACACGTACACCAAATCGTC
ATGACTATGCGTTAAAACCATTTGGTCGTACAGTTATGAATGAATTGCAAGATAATAATTATGATGTAATTGCGATTGGA
AAGATTTCTGATATTTACGATGGTGAAGGAGTAACAGAAGCGCTTCGTACAAAATCTAATATGGACGGAATGGATAAACT
TATAGATACATTGAATATGGATTTTACAGGTCTTAGCTTCTTAAATTTAGTTGATTTTGATGCAATGTTTGGCCATCGCC
GTGATCCAAAAGGGTATGGAGAAGCATTACAAGAATACGATGCACGCCTTCCAGAAGTATTTGAAAAATTAAAAGAAGAT
GATTTATTAATCATTACAGCAGACCATGGTAACGATCCAATTCACCACGGTACAGATCATACACGTGAATATGTACCATT
ATTAGTGTATAGCCCAAGCATGAAAGATGGCGGACAGAAATTACCACTTCGCCAAACATTCGCTGATATTGGTGCAACTG
TAGCAGAAAACTTCGGTGTAAACATGCCAGAATACGGAACAAGTTTCTTAAAGGAATTAAAGAAATAG

Upstream 100 bases:

>100_bases
TATTCTTGAGCAAATGAGAGAATTCTCATTCGTAACAGTTTCACTTTACAGCGTTTTGAACATACTACAAGAAGTAGAAC
TGAACATATAGGAGGTTGTC

Downstream 100 bases:

>100_bases
GAGGATATATTTATGAATCGTGAACTTATTACAAAATCAGCAACATACTTAAAAGAGAAATTTCAAGAAACACCAAAGGT
TGGATTAATCCTTGGGTCTG

Product: phosphopentomutase

Products: NA

Alternate protein names: Phosphodeoxyribomutase [H]

Number of amino acids: Translated: 395; Mature: 395

Protein sequence:

>395_residues
MMHKYKRIFLVVMDSVGIGEAPDAEKFGDVGADTLGHIAEHMNGLNMPNMVKLGLGNIREMKGISKVENPLGYYTKMQEK
STGKDTMTGHWEIMGLYIDKPFQVFPEGFPKELIDELEARTGRKIIGNKPASGTAILDELGKEQMETGSLIVYTSADSVL
QIAAHEEVVPLEELYNICKIARELTLDEKYMVGRVIARPFVGEPGNFTRTPNRHDYALKPFGRTVMNELQDNNYDVIAIG
KISDIYDGEGVTEALRTKSNMDGMDKLIDTLNMDFTGLSFLNLVDFDAMFGHRRDPKGYGEALQEYDARLPEVFEKLKED
DLLIITADHGNDPIHHGTDHTREYVPLLVYSPSMKDGGQKLPLRQTFADIGATVAENFGVNMPEYGTSFLKELKK

Sequences:

>Translated_395_residues
MMHKYKRIFLVVMDSVGIGEAPDAEKFGDVGADTLGHIAEHMNGLNMPNMVKLGLGNIREMKGISKVENPLGYYTKMQEK
STGKDTMTGHWEIMGLYIDKPFQVFPEGFPKELIDELEARTGRKIIGNKPASGTAILDELGKEQMETGSLIVYTSADSVL
QIAAHEEVVPLEELYNICKIARELTLDEKYMVGRVIARPFVGEPGNFTRTPNRHDYALKPFGRTVMNELQDNNYDVIAIG
KISDIYDGEGVTEALRTKSNMDGMDKLIDTLNMDFTGLSFLNLVDFDAMFGHRRDPKGYGEALQEYDARLPEVFEKLKED
DLLIITADHGNDPIHHGTDHTREYVPLLVYSPSMKDGGQKLPLRQTFADIGATVAENFGVNMPEYGTSFLKELKK
>Mature_395_residues
MMHKYKRIFLVVMDSVGIGEAPDAEKFGDVGADTLGHIAEHMNGLNMPNMVKLGLGNIREMKGISKVENPLGYYTKMQEK
STGKDTMTGHWEIMGLYIDKPFQVFPEGFPKELIDELEARTGRKIIGNKPASGTAILDELGKEQMETGSLIVYTSADSVL
QIAAHEEVVPLEELYNICKIARELTLDEKYMVGRVIARPFVGEPGNFTRTPNRHDYALKPFGRTVMNELQDNNYDVIAIG
KISDIYDGEGVTEALRTKSNMDGMDKLIDTLNMDFTGLSFLNLVDFDAMFGHRRDPKGYGEALQEYDARLPEVFEKLKED
DLLIITADHGNDPIHHGTDHTREYVPLLVYSPSMKDGGQKLPLRQTFADIGATVAENFGVNMPEYGTSFLKELKK

Specific function: Phosphotransfer between the C1 and C5 carbon atoms of pentose [H]

COG id: COG1015

COG function: function code G; Phosphopentomutase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphopentomutase family [H]

Homologues:

Organism=Escherichia coli, GI1790843, Length=415, Percent_Identity=47.4698795180723, Blast_Score=345, Evalue=2e-96,
Organism=Escherichia coli, GI1789781, Length=424, Percent_Identity=26.4150943396226, Blast_Score=118, Evalue=6e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017849
- InterPro:   IPR017850
- InterPro:   IPR010045
- InterPro:   IPR006124 [H]

Pfam domain/function: PF01676 Metalloenzyme [H]

EC number: =5.4.2.7 [H]

Molecular weight: Translated: 44209; Mature: 44209

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMHKYKRIFLVVMDSVGIGEAPDAEKFGDVGADTLGHIAEHMNGLNMPNMVKLGLGNIRE
CCCHHHEEEEEEEECCCCCCCCCHHHHCCCCHHHHHHHHHHHCCCCCCCEEHHCCCCHHH
MKGISKVENPLGYYTKMQEKSTGKDTMTGHWEIMGLYIDKPFQVFPEGFPKELIDELEAR
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCHHCCCCCCCHHHHHHHHHH
TGRKIIGNKPASGTAILDELGKEQMETGSLIVYTSADSVLQIAAHEEVVPLEELYNICKI
CCCHHHCCCCCCCHHHHHHHCHHHHCCCCEEEEECCCCHHHHHHCCCCCCHHHHHHHHHH
ARELTLDEKYMVGRVIARPFVGEPGNFTRTPNRHDYALKPFGRTVMNELQDNNYDVIAIG
HHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHCCCCCCEEEEC
KISDIYDGEGVTEALRTKSNMDGMDKLIDTLNMDFTGLSFLNLVDFDAMFGHRRDPKGYG
CCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHH
EALQEYDARLPEVFEKLKEDDLLIITADHGNDPIHHGTDHTREYVPLLVYSPSMKDGGQK
HHHHHHHCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC
LPLRQTFADIGATVAENFGVNMPEYGTSFLKELKK
CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MMHKYKRIFLVVMDSVGIGEAPDAEKFGDVGADTLGHIAEHMNGLNMPNMVKLGLGNIRE
CCCHHHEEEEEEEECCCCCCCCCHHHHCCCCHHHHHHHHHHHCCCCCCCEEHHCCCCHHH
MKGISKVENPLGYYTKMQEKSTGKDTMTGHWEIMGLYIDKPFQVFPEGFPKELIDELEAR
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCHHCCCCCCCHHHHHHHHHH
TGRKIIGNKPASGTAILDELGKEQMETGSLIVYTSADSVLQIAAHEEVVPLEELYNICKI
CCCHHHCCCCCCCHHHHHHHCHHHHCCCCEEEEECCCCHHHHHHCCCCCCHHHHHHHHHH
ARELTLDEKYMVGRVIARPFVGEPGNFTRTPNRHDYALKPFGRTVMNELQDNNYDVIAIG
HHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHCCCCCCEEEEC
KISDIYDGEGVTEALRTKSNMDGMDKLIDTLNMDFTGLSFLNLVDFDAMFGHRRDPKGYG
CCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHH
EALQEYDARLPEVFEKLKEDDLLIITADHGNDPIHHGTDHTREYVPLLVYSPSMKDGGQK
HHHHHHHCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC
LPLRQTFADIGATVAENFGVNMPEYGTSFLKELKK
CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA