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The map label for this gene is caaD [H]

Identifier: 152976355

GI number: 152976355

Start: 2730009

End: 2730347

Strand: Reverse

Name: caaD [H]

Synonym: Bcer98_2643

Alternate gene names: 152976355

Gene position: 2730347-2730009 (Counterclockwise)

Preceding gene: 152976356

Following gene: 152976354

Centisome position: 66.81

GC content: 33.04

Gene sequence:

>339_bases
ATGGCGACAAAGCAAACAAATACAAATAATTCAAAGGTAGATCTCGTTTATCGTAGAAGAAAAAGTGCAGAGGAAATGAA
ACATCAAGTTATTACATTTGGATTAATGATTTTTTTGACAATTGTAGCATTTGTAGCAGTAGCGTATCCAAAGACATTTA
GTCCCATTTTCTCTGTCCCGTTTATTTTATTATTAGCGGTCGTTCAAGTAATCTTTCAATTGTATTATTTTATGCACATG
AGTCATAAAGGACATGAAGCAGCTTCGTTCTTTCTATACTCTGGATTGTTAATAGGGCTATTAACGATTTTGGCCTTCAT
GACAATTGTGTGGATATAA

Upstream 100 bases:

>100_bases
CCCAAAGTTTTATGTTGCATCTATTTATTGGCACTTTATTGATGTAGTTTGGGTGTTTATTTTCACTGTAGTATATTTGA
TGGGAATGGTGGGATAAACA

Downstream 100 bases:

>100_bases
GAAAACATGAGAGGAGGGCCTTTGGATTACTATGGTCCTCCTTTTTTATGAAGCGACTACATTTTTTGAAAGGTGGGTGT
AAATCATGAGTAACTTGTGG

Product: cytochrome c oxidase subunit IV

Products: NA

Alternate protein names: Cytochrome aa3 subunit 4B; Cytochrome c oxidase polypeptide IVB [H]

Number of amino acids: Translated: 112; Mature: 111

Protein sequence:

>112_residues
MATKQTNTNNSKVDLVYRRRKSAEEMKHQVITFGLMIFLTIVAFVAVAYPKTFSPIFSVPFILLLAVVQVIFQLYYFMHM
SHKGHEAASFFLYSGLLIGLLTILAFMTIVWI

Sequences:

>Translated_112_residues
MATKQTNTNNSKVDLVYRRRKSAEEMKHQVITFGLMIFLTIVAFVAVAYPKTFSPIFSVPFILLLAVVQVIFQLYYFMHM
SHKGHEAASFFLYSGLLIGLLTILAFMTIVWI
>Mature_111_residues
ATKQTNTNNSKVDLVYRRRKSAEEMKHQVITFGLMIFLTIVAFVAVAYPKTFSPIFSVPFILLLAVVQVIFQLYYFMHMS
HKGHEAASFFLYSGLLIGLLTILAFMTIVWI

Specific function: Unknown

COG id: COG3125

COG function: function code C; Heme/copper-type cytochrome/quinol oxidase, subunit 4

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c oxidase bacterial subunit 4 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014257
- InterPro:   IPR005171 [H]

Pfam domain/function: PF03626 COX4_pro [H]

EC number: =1.9.3.1 [H]

Molecular weight: Translated: 12841; Mature: 12709

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATKQTNTNNSKVDLVYRRRKSAEEMKHQVITFGLMIFLTIVAFVAVAYPKTFSPIFSVP
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
FILLLAVVQVIFQLYYFMHMSHKGHEAASFFLYSGLLIGLLTILAFMTIVWI
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ATKQTNTNNSKVDLVYRRRKSAEEMKHQVITFGLMIFLTIVAFVAVAYPKTFSPIFSVP
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
FILLLAVVQVIFQLYYFMHMSHKGHEAASFFLYSGLLIGLLTILAFMTIVWI
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1964459 [H]