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The map label for this gene is ylmH [H]

Identifier: 152976258

GI number: 152976258

Start: 2648125

End: 2648898

Strand: Reverse

Name: ylmH [H]

Synonym: Bcer98_2546

Alternate gene names: 152976258

Gene position: 2648898-2648125 (Counterclockwise)

Preceding gene: 152976259

Following gene: 152976257

Centisome position: 64.81

GC content: 36.18

Gene sequence:

>774_bases
ATGAGCATTTACGAACATTTTAGGCCTGAAGAGGCCAGTTTTGTTGATAAAGTGTTGGAATGGGAACGAGCAGTAGAAGA
GTACCATCAAGTAAAATTAACAGATTTCCTTGATCCGCGTCAGCAACAAATTGTAACTACAATAGTTGGACAGCAAGGAG
ATGTTTCTTTACAATTTAATGGTGCAGCGCCAAAAGCGGAGAGAAAAAGGGCACTTATTTATCCAGATTATCTTGCTTTA
AATGAAGAAGAATTTCAAGTAGAAGTATTAGAAATTGATTATCCTTCCAAATTTTATACGCTTGAACATAGACAAATACT
AGGTGCACTTATGTCCCTTGGTTTAAAGAGAGAAAAGTACGGTGATATTTTTATTCAAGAAAATCGTGTCCAAATCGTAG
TCGCAAAAGAAGTTGTTTCTTATATTGAAATGAACTTACAATCAATTGGAAAAACAAAGGTTTCTCTCTTCAGTGTATCA
GCAGAGAATGTTTTGCAATTGCAGGATGAATGGAGAGAGCAATTTGGAACTGTTTCATCACTACGCTTAGACGTCGTGTT
AGCTGAAATCTTGCATCTATCACGTCAAAAAGTACAACCCCTTATAAAGAATGGGCTTGTAAAAGTGAATTGGAAAGTTG
TAGATCAAACTTCATATGAATGTCTTCCAGGAGATATTCTGTCGGTCAGAGGACATGGAAGAAGTAAATTGTTTTCGGTC
GACGGAAGAACGAAAAAAGACAAATGGCGAGTTTTGTATGGTATACTAAAATGA

Upstream 100 bases:

>100_bases
TAATTGATATTTCTCCGATCGTTGCAATTATTGCATTAAAGCTTGCTAGCAGCGGCTTAGTCACTTTATTTGGCTACTTT
TTATAAGATAGGTTGCATGC

Downstream 100 bases:

>100_bases
TTGATTTTTTAGAAGGAAAAAACTCTTATTTTGTCGAAGAAAAGATATAATTAAAAGAGGAAAATTTAGATAACTACTTG
GAGGTGGCTTTTGTGCCGTT

Product: RNA-binding S4 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 256

Protein sequence:

>257_residues
MSIYEHFRPEEASFVDKVLEWERAVEEYHQVKLTDFLDPRQQQIVTTIVGQQGDVSLQFNGAAPKAERKRALIYPDYLAL
NEEEFQVEVLEIDYPSKFYTLEHRQILGALMSLGLKREKYGDIFIQENRVQIVVAKEVVSYIEMNLQSIGKTKVSLFSVS
AENVLQLQDEWREQFGTVSSLRLDVVLAEILHLSRQKVQPLIKNGLVKVNWKVVDQTSYECLPGDILSVRGHGRSKLFSV
DGRTKKDKWRVLYGILK

Sequences:

>Translated_257_residues
MSIYEHFRPEEASFVDKVLEWERAVEEYHQVKLTDFLDPRQQQIVTTIVGQQGDVSLQFNGAAPKAERKRALIYPDYLAL
NEEEFQVEVLEIDYPSKFYTLEHRQILGALMSLGLKREKYGDIFIQENRVQIVVAKEVVSYIEMNLQSIGKTKVSLFSVS
AENVLQLQDEWREQFGTVSSLRLDVVLAEILHLSRQKVQPLIKNGLVKVNWKVVDQTSYECLPGDILSVRGHGRSKLFSV
DGRTKKDKWRVLYGILK
>Mature_256_residues
SIYEHFRPEEASFVDKVLEWERAVEEYHQVKLTDFLDPRQQQIVTTIVGQQGDVSLQFNGAAPKAERKRALIYPDYLALN
EEEFQVEVLEIDYPSKFYTLEHRQILGALMSLGLKREKYGDIFIQENRVQIVVAKEVVSYIEMNLQSIGKTKVSLFSVSA
ENVLQLQDEWREQFGTVSSLRLDVVLAEILHLSRQKVQPLIKNGLVKVNWKVVDQTSYECLPGDILSVRGHGRSKLFSVD
GRTKKDKWRVLYGILK

Specific function: Unknown

COG id: COG2302

COG function: function code S; Uncharacterized conserved protein, contains S4-like domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 29703; Mature: 29571

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIYEHFRPEEASFVDKVLEWERAVEEYHQVKLTDFLDPRQQQIVTTIVGQQGDVSLQFN
CCCHHHCCCCHHHHHHHHHHHHHHHHHHHHEHHHHHCCHHHHHHHHHHCCCCCCEEEEEC
GAAPKAERKRALIYPDYLALNEEEFQVEVLEIDYPSKFYTLEHRQILGALMSLGLKREKY
CCCCHHHCCEEEECCCCEEECCCCEEEEEEEECCCCCEEEHHHHHHHHHHHHCCCCCCCC
GDIFIQENRVQIVVAKEVVSYIEMNLQSIGKTKVSLFSVSAENVLQLQDEWREQFGTVSS
CCEEEECCCEEEEEHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHHCCHHH
LRLDVVLAEILHLSRQKVQPLIKNGLVKVNWKVVDQTSYECLPGDILSVRGHGRSKLFSV
HHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCCCCCCCCEEEECCCCCCEEEEC
DGRTKKDKWRVLYGILK
CCCCCCHHHHHHHEECC
>Mature Secondary Structure 
SIYEHFRPEEASFVDKVLEWERAVEEYHQVKLTDFLDPRQQQIVTTIVGQQGDVSLQFN
CCHHHCCCCHHHHHHHHHHHHHHHHHHHHEHHHHHCCHHHHHHHHHHCCCCCCEEEEEC
GAAPKAERKRALIYPDYLALNEEEFQVEVLEIDYPSKFYTLEHRQILGALMSLGLKREKY
CCCCHHHCCEEEECCCCEEECCCCEEEEEEEECCCCCEEEHHHHHHHHHHHHCCCCCCCC
GDIFIQENRVQIVVAKEVVSYIEMNLQSIGKTKVSLFSVSAENVLQLQDEWREQFGTVSS
CCEEEECCCEEEEEHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHHCCHHH
LRLDVVLAEILHLSRQKVQPLIKNGLVKVNWKVVDQTSYECLPGDILSVRGHGRSKLFSV
HHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCCCCCCCCEEEECCCCCCEEEEC
DGRTKKDKWRVLYGILK
CCCCCCHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9045828; 9384377 [H]