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The map label for this gene is codY [H]

Identifier: 152976194

GI number: 152976194

Start: 2578031

End: 2578810

Strand: Reverse

Name: codY [H]

Synonym: Bcer98_2480

Alternate gene names: 152976194

Gene position: 2578810-2578031 (Counterclockwise)

Preceding gene: 152976195

Following gene: 152976193

Centisome position: 63.1

GC content: 36.92

Gene sequence:

>780_bases
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCTTTATTACAAAGCGCAGCAGGAAAACCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATTGAAGCGAACGTATTCGTTGTGAGCCGTCGCGGTAAATTACTAGGATATGCAATCC
ATCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAGCGTCAATTCCCAGAGGAATATACACAAAACTTATTC
AACGTTACTGAAACATCTTCAAATTTAGATGTAAATAGCGAATATACAGCTTTCCCTGTAGAAAACAAAGATTTATTCGG
GCAAGGCTTAACGACAATCGTGCCGATCGTGGGCGGTGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTAGGTCGTG
AATTCTTAGATGATGATTTAATTCTTGCTGAGTACAGTGCAACTGTAGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAGATTGAAGAAGAAGCTCGCAGCAAAGCTGTTGTTCAAATGGCGATTAGCTCTCTATCTTACAGTGAGTTAGAAGCGAT
TGAACATATCTTTGAAGAGTTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GTTCTGTAATTGTGAATGCACTTCGTAAATTAGAAAGTGCGGGAGTAATTGAATCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAATGACAAATTCTTACACGAACTTGCAAAATTAAAAACAAACTAA

Upstream 100 bases:

>100_bases
GATGTGAGCCAGTTTATTTTGTAATAGTATCATCAGGTGACTCGCCCTAGTTTCCAAGTGATGAAAAATATGTGAGTAAC
ATGTAGGAGGAACTTTTGAA

Downstream 100 bases:

>100_bases
TGTAAGTAAAAAGCTTTCCTCAAAAATGAGGAGAGCTTTTTTGTTTTGCGTGCCCAGCTTACTTGCTAGTGAAAGACAAG
CTTAGGTAAGAGCCAAATCG

Product: transcriptional repressor CodY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQNLF
NVTETSSNLDVNSEYTAFPVENKDLFGQGLTTIVPIVGGGERLGTLVLARLGREFLDDDLILAEYSATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN

Sequences:

>Translated_259_residues
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQNLF
NVTETSSNLDVNSEYTAFPVENKDLFGQGLTTIVPIVGGGERLGTLVLARLGREFLDDDLILAEYSATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
>Mature_259_residues
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQNLF
NVTETSSNLDVNSEYTAFPVENKDLFGQGLTTIVPIVGGGERLGTLVLARLGREFLDDDLILAEYSATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN

Specific function: DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of

COG id: COG4465

COG function: function code K; Pleiotropic transcriptional repressor

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CodY family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014154
- InterPro:   IPR010312
- InterPro:   IPR013198
- InterPro:   IPR011991 [H]

Pfam domain/function: PF06018 CodY; PF08222 HTH_CodY [H]

EC number: NA

Molecular weight: Translated: 28844; Mature: 28844

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENE
CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHH
RMKQMLAERQFPEEYTQNLFNVTETSSNLDVNSEYTAFPVENKDLFGQGLTTIVPIVGGG
HHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCHHHHCCHHHHHEECCCC
ERLGTLVLARLGREFLDDDLILAEYSATVVGMEILREKAEEIEEEARSKAVVQMAISSLS
HHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
YSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
YIKVLNDKFLHELAKLKTN
HHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENE
CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHH
RMKQMLAERQFPEEYTQNLFNVTETSSNLDVNSEYTAFPVENKDLFGQGLTTIVPIVGGG
HHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCHHHHCCHHHHHEECCCC
ERLGTLVLARLGREFLDDDLILAEYSATVVGMEILREKAEEIEEEARSKAVVQMAISSLS
HHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
YSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
YIKVLNDKFLHELAKLKTN
HHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA