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The map label for this gene is insF1 [H]

Identifier: 152975895

GI number: 152975895

Start: 2254051

End: 2254866

Strand: Reverse

Name: insF1 [H]

Synonym: Bcer98_2163

Alternate gene names: 152975895

Gene position: 2254866-2254051 (Counterclockwise)

Preceding gene: 152975896

Following gene: 152975891

Centisome position: 55.17

GC content: 34.56

Gene sequence:

>816_bases
ATGTGTCAAACACTTGGAATAGCGAGAAGTTCGTATTACCAATCTCAGCACAAAACAGAGTCAAAGCGTAGTCGTGAAAA
TGAAGAGTTAACCAAACAAATTATACAAATTCATCAAGATAGTGGAGGGCGTTACGGTGCACCGAAAATTCATCAAACCC
TATTGGAACAAGGGTTTCAAGTAAGTGTAAAGCGTGTGCAACGACTCATGAAAAAAGAAAATATTCGCTCCATCATCTTA
AAGAAATATAAACCACATTCATCAAAATCAACTATAGAAGAACGAATAAATCTACTAGAACAGGACTTCTCTACAACGAC
AATTAATGAAAAGTGGGTGGCGGATATTACTTATATTTACACGCAAAAAGATGGCTGGTGTTACCTTGCATCAGTGATGG
ATTTGCATTCTAAGAAAATTATTGGATATTCATTTTCACGAAATATGACAACGAACCTTGTGGTAAAAGCTTTAGAAAAC
GCTTACCATACACAAAGACCACAAAAAGGGCTCATTTTACATACTGATTTAGGAACACAATATACAAGTCAGGAATTTCA
AACTTTACTCGCGAATTATAAAATAAAGCCTTCTTTCAGTAAAAAAGGTTGTCCATACGATAACGCTTGTATTGAGTCAT
TTCACGCCATTTTAAAGAAAGAAGAAGTATATCGTACAAAATATGTCTCATTTGAAGAAGCAAATCTAGCACTATTTCAA
TACATTGAGGGATTTTATAATCGTAAGCGAATCCATAGTAGCATCGGTTATAAAACTCCTCAAACAATAGAAGATCTGGC
TATAAAAGTAGCTTAG

Upstream 100 bases:

>100_bases
AGATATTAAAAAAGGCTATGGCCATATTCGCGAAAAAATAAACGATACAGAATTACATCAATTTATCGATTGTCAAAAAG
AAACACACTCTGTTCGTACA

Downstream 100 bases:

>100_bases
ATTTAACTTTTTTGTGTCCAAAATATTGACTCAAATCCATGTTGTTACTCATGATATTGATTTGCAAAATTCATTTTCTA
GAATAATTAATTTGGGATAG

Product: integrase catalytic region

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 271

Protein sequence:

>271_residues
MCQTLGIARSSYYQSQHKTESKRSRENEELTKQIIQIHQDSGGRYGAPKIHQTLLEQGFQVSVKRVQRLMKKENIRSIIL
KKYKPHSSKSTIEERINLLEQDFSTTTINEKWVADITYIYTQKDGWCYLASVMDLHSKKIIGYSFSRNMTTNLVVKALEN
AYHTQRPQKGLILHTDLGTQYTSQEFQTLLANYKIKPSFSKKGCPYDNACIESFHAILKKEEVYRTKYVSFEEANLALFQ
YIEGFYNRKRIHSSIGYKTPQTIEDLAIKVA

Sequences:

>Translated_271_residues
MCQTLGIARSSYYQSQHKTESKRSRENEELTKQIIQIHQDSGGRYGAPKIHQTLLEQGFQVSVKRVQRLMKKENIRSIIL
KKYKPHSSKSTIEERINLLEQDFSTTTINEKWVADITYIYTQKDGWCYLASVMDLHSKKIIGYSFSRNMTTNLVVKALEN
AYHTQRPQKGLILHTDLGTQYTSQEFQTLLANYKIKPSFSKKGCPYDNACIESFHAILKKEEVYRTKYVSFEEANLALFQ
YIEGFYNRKRIHSSIGYKTPQTIEDLAIKVA
>Mature_271_residues
MCQTLGIARSSYYQSQHKTESKRSRENEELTKQIIQIHQDSGGRYGAPKIHQTLLEQGFQVSVKRVQRLMKKENIRSIIL
KKYKPHSSKSTIEERINLLEQDFSTTTINEKWVADITYIYTQKDGWCYLASVMDLHSKKIIGYSFSRNMTTNLVVKALEN
AYHTQRPQKGLILHTDLGTQYTSQEFQTLLANYKIKPSFSKKGCPYDNACIESFHAILKKEEVYRTKYVSFEEANLALFQ
YIEGFYNRKRIHSSIGYKTPQTIEDLAIKVA

Specific function: Involved in the transposition of the insertion sequence IS3 [H]

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Homo sapiens, GI310129419, Length=229, Percent_Identity=34.061135371179, Blast_Score=132, Evalue=3e-31,
Organism=Escherichia coli, GI1788405, Length=268, Percent_Identity=38.0597014925373, Blast_Score=188, Evalue=4e-49,
Organism=Escherichia coli, GI1787263, Length=268, Percent_Identity=38.0597014925373, Blast_Score=188, Evalue=4e-49,
Organism=Escherichia coli, GI1786753, Length=268, Percent_Identity=38.0597014925373, Blast_Score=188, Evalue=4e-49,
Organism=Escherichia coli, GI1786570, Length=268, Percent_Identity=38.0597014925373, Blast_Score=188, Evalue=4e-49,
Organism=Escherichia coli, GI1786490, Length=268, Percent_Identity=38.0597014925373, Blast_Score=188, Evalue=4e-49,
Organism=Escherichia coli, GI1789981, Length=255, Percent_Identity=32.9411764705882, Blast_Score=134, Evalue=7e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 31515; Mature: 31515

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCQTLGIARSSYYQSQHKTESKRSRENEELTKQIIQIHQDSGGRYGAPKIHQTLLEQGFQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCHH
VSVKRVQRLMKKENIRSIILKKYKPHSSKSTIEERINLLEQDFSTTTINEKWVADITYIY
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHEEEEEEE
TQKDGWCYLASVMDLHSKKIIGYSFSRNMTTNLVVKALENAYHTQRPQKGLILHTDLGTQ
ECCCCCCHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCC
YTSQEFQTLLANYKIKPSFSKKGCPYDNACIESFHAILKKEEVYRTKYVSFEEANLALFQ
HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
YIEGFYNRKRIHSSIGYKTPQTIEDLAIKVA
HHHHHHHHHHHHHHCCCCCCCCHHHHHHCCC
>Mature Secondary Structure
MCQTLGIARSSYYQSQHKTESKRSRENEELTKQIIQIHQDSGGRYGAPKIHQTLLEQGFQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCHH
VSVKRVQRLMKKENIRSIILKKYKPHSSKSTIEERINLLEQDFSTTTINEKWVADITYIY
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHEEEEEEE
TQKDGWCYLASVMDLHSKKIIGYSFSRNMTTNLVVKALENAYHTQRPQKGLILHTDLGTQ
ECCCCCCHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCC
YTSQEFQTLLANYKIKPSFSKKGCPYDNACIESFHAILKKEEVYRTKYVSFEEANLALFQ
HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
YIEGFYNRKRIHSSIGYKTPQTIEDLAIKVA
HHHHHHHHHHHHHHCCCCCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2987844; 9278503 [H]