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The map label for this gene is yddE [C]

Identifier: 152975883

GI number: 152975883

Start: 2237467

End: 2238366

Strand: Reverse

Name: yddE [C]

Synonym: Bcer98_2143

Alternate gene names: 152975883

Gene position: 2238366-2237467 (Counterclockwise)

Preceding gene: 152975884

Following gene: 152975881

Centisome position: 54.77

GC content: 38.11

Gene sequence:

>900_bases
ATGAAGAAAATAAAGGTATTTCATTATGAGGCATTTAGTCATAAACCCAATATGGGAAATCCAGCAGGGATTGTATTAGA
TGCAGAAGGATTAACAGATTATGAGATGCAGCGTATCGCGGAAAAAGTAGGATTTAACGAAACCGCTTTTGTATTCCCTT
CAAATGTTGCCGATATAAAGATTCGTTACTTCACGCCAGGTCATGAAATGAATCTTTGTGGACATGCAACAGTGGCTACT
ATATATGCTCTTTACACAAGAGGAGTATGGAAAGAAGTCCGTAACCTTTTGCTCGAAACGAAAGCTGGAATTTTACCAGT
ATGCGTAGAAATAGATGGGAATGGAGAAGTATATGTTCGAATGCGACAAGTAGAACCACAGTTTCAAGGATTTCATGGCT
CTAAAGAAGAGGTAGCACGGAGCATCGGTCTTCATGAAGAAGATATAGATGAAACATTACCAATTGTATATGGAAGTACA
GGGGTTTGGACATTATTAGTACCTATTAAAACATTGGTTGCCTGCGAAAAGATGAAACCAAATAATAAGCTCTTTCCATC
TATTTTAGTAGAAATACCTAACGCGTCTATTCATCCGTTTTGTTTCGAAACGTATCATGAAGAAGCGCATATGCATGGTC
GTCATTTTTCATCACCGTATGCTGGAACAATTGAAGATCCAGTAACAGGAACAGCTTCTGGTGTAATGGGAGCCTATTAT
GCTACATTTTTGAAGGAAGATAAAGAACAGGAAATGATATGTATTGTTGAACAAGGGCAGGAGATACACAAAGATGGACG
TGTACGAGTGTATGTGCAGAGAACAGAGAAAGATAATGTATTACATGTTGAAGTGGCAGGAACAGCAGTGTATGTAAGAG
AGTTTGAAATTTCAGTGTAA

Upstream 100 bases:

>100_bases
TTTAGAGTAAGATGAGAGGCTCTGCTCAACGACGAATAGCTCCTTTGTTTATTTCTATTAATTTTTGTATGAAAAAGTCT
GTAAGATGAGGGGATACAAA

Downstream 100 bases:

>100_bases
GGATAAAAAAGTTCGGGATATGACCGAACTTTTTTCATTTGTTGATGACTTCAATAAATGATGTTTGTCCATTATGTCTT
ATTGCAGAATAGAAGTTTTG

Product: PhzF family phenazine biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MKKIKVFHYEAFSHKPNMGNPAGIVLDAEGLTDYEMQRIAEKVGFNETAFVFPSNVADIKIRYFTPGHEMNLCGHATVAT
IYALYTRGVWKEVRNLLLETKAGILPVCVEIDGNGEVYVRMRQVEPQFQGFHGSKEEVARSIGLHEEDIDETLPIVYGST
GVWTLLVPIKTLVACEKMKPNNKLFPSILVEIPNASIHPFCFETYHEEAHMHGRHFSSPYAGTIEDPVTGTASGVMGAYY
ATFLKEDKEQEMICIVEQGQEIHKDGRVRVYVQRTEKDNVLHVEVAGTAVYVREFEISV

Sequences:

>Translated_299_residues
MKKIKVFHYEAFSHKPNMGNPAGIVLDAEGLTDYEMQRIAEKVGFNETAFVFPSNVADIKIRYFTPGHEMNLCGHATVAT
IYALYTRGVWKEVRNLLLETKAGILPVCVEIDGNGEVYVRMRQVEPQFQGFHGSKEEVARSIGLHEEDIDETLPIVYGST
GVWTLLVPIKTLVACEKMKPNNKLFPSILVEIPNASIHPFCFETYHEEAHMHGRHFSSPYAGTIEDPVTGTASGVMGAYY
ATFLKEDKEQEMICIVEQGQEIHKDGRVRVYVQRTEKDNVLHVEVAGTAVYVREFEISV
>Mature_299_residues
MKKIKVFHYEAFSHKPNMGNPAGIVLDAEGLTDYEMQRIAEKVGFNETAFVFPSNVADIKIRYFTPGHEMNLCGHATVAT
IYALYTRGVWKEVRNLLLETKAGILPVCVEIDGNGEVYVRMRQVEPQFQGFHGSKEEVARSIGLHEEDIDETLPIVYGST
GVWTLLVPIKTLVACEKMKPNNKLFPSILVEIPNASIHPFCFETYHEEAHMHGRHFSSPYAGTIEDPVTGTASGVMGAYY
ATFLKEDKEQEMICIVEQGQEIHKDGRVRVYVQRTEKDNVLHVEVAGTAVYVREFEISV

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI62177133, Length=288, Percent_Identity=26.3888888888889, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI74316009, Length=259, Percent_Identity=26.6409266409266, Blast_Score=74, Evalue=1e-13,
Organism=Escherichia coli, GI1787737, Length=304, Percent_Identity=33.8815789473684, Blast_Score=135, Evalue=2e-33,
Organism=Caenorhabditis elegans, GI17542160, Length=307, Percent_Identity=26.7100977198697, Blast_Score=84, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17542154, Length=307, Percent_Identity=26.7100977198697, Blast_Score=84, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17542158, Length=267, Percent_Identity=26.5917602996255, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17542152, Length=267, Percent_Identity=26.5917602996255, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 33670; Mature: 33670

Theoretical pI: Translated: 5.72; Mature: 5.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIKVFHYEAFSHKPNMGNPAGIVLDAEGLTDYEMQRIAEKVGFNETAFVFPSNVADIK
CCCEEEEEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCEEEE
IRYFTPGHEMNLCGHATVATIYALYTRGVWKEVRNLLLETKAGILPVCVEIDGNGEVYVR
EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEE
MRQVEPQFQGFHGSKEEVARSIGLHEEDIDETLPIVYGSTGVWTLLVPIKTLVACEKMKP
EEECCHHHCCCCCCHHHHHHHHCCCHHHHHCCCCEEECCCCCEEHHHHHHHHHHHHHCCC
NNKLFPSILVEIPNASIHPFCFETYHEEAHMHGRHFSSPYAGTIEDPVTGTASGVMGAYY
CCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
ATFLKEDKEQEMICIVEQGQEIHKDGRVRVYVQRTEKDNVLHVEVAGTAVYVREFEISV
HHHHHCCCCCCEEEEEECCHHHCCCCCEEEEEEECCCCCEEEEEECCEEEEEEEEEECC
>Mature Secondary Structure
MKKIKVFHYEAFSHKPNMGNPAGIVLDAEGLTDYEMQRIAEKVGFNETAFVFPSNVADIK
CCCEEEEEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCEEEE
IRYFTPGHEMNLCGHATVATIYALYTRGVWKEVRNLLLETKAGILPVCVEIDGNGEVYVR
EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEE
MRQVEPQFQGFHGSKEEVARSIGLHEEDIDETLPIVYGSTGVWTLLVPIKTLVACEKMKP
EEECCHHHCCCCCCHHHHHHHHCCCHHHHHCCCCEEECCCCCEEHHHHHHHHHHHHHCCC
NNKLFPSILVEIPNASIHPFCFETYHEEAHMHGRHFSSPYAGTIEDPVTGTASGVMGAYY
CCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
ATFLKEDKEQEMICIVEQGQEIHKDGRVRVYVQRTEKDNVLHVEVAGTAVYVREFEISV
HHHHHCCCCCCEEEEEECCHHHCCCCCEEEEEEECCCCCEEEEEECCEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]