Click here to switch to the map view.

The map label for this gene is yvmB [H]

Identifier: 152975690

GI number: 152975690

Start: 2038190

End: 2038735

Strand: Reverse

Name: yvmB [H]

Synonym: Bcer98_1927

Alternate gene names: 152975690

Gene position: 2038735-2038190 (Counterclockwise)

Preceding gene: 152975692

Following gene: 152975689

Centisome position: 49.88

GC content: 32.42

Gene sequence:

>546_bases
ATGGCATCGGCTTTTAACAATGATAAAAATATATTAATAAAGCAAATCGTGAACTTAACGGGAGAACTGGCTAAAAAGTG
GGGACAGGAAGAGGATGAGGAGAGAGAATGGTTACTTCAAAATTGTAAAAATCCTCATATTGCTACATTGTTAAAAGAAG
TAACAGTAAAAATGCTTCATGTTCTTGATGCGATTGGAAAGCATGAACCGGTTAATGGAATTACAATCGCATCTGAAACG
GGGATTCCAAAGGGGAGTGTATCGAAAATGACTCGCCGATTAATGAATAAAAATTTGATTGTGACAGAAACCATTCCAAA
TAATAAAAAGGAAATTTTATTTAAAACAACTTCTTTAGGAAAAGAATTATTTCATTTACATCAAGCATTACATCAAGAAA
TAAATAAAGGGGTTGTACAATTTTTAAGTAGATACACACAGGAAGAACTGCAATTTGTTACCCGTTTTTTAAGTGATACT
TTAGAAGCATCATGGGTAACAATGGAAGAGAATCTAGTGGATGAAAATAAAAATCATAAAGGTTGA

Upstream 100 bases:

>100_bases
AAATATATATTCAAGTTTTGTCAAATTGTTTCTCGGAAACTTTAATCTTCTACCCCTTCTTGATATACTAATAAAAACAC
AAATGTAAAGGAGTTTTTTT

Downstream 100 bases:

>100_bases
GCAACTTTTGTTTGAGAAAGTTTAATTTCGGTTCTATGGACAAGTTCCCTTCGTTTATACTTGATGTAGAGAAGATGACT
AGGCAACTTAAGCAGAGTTA

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 180

Protein sequence:

>181_residues
MASAFNNDKNILIKQIVNLTGELAKKWGQEEDEEREWLLQNCKNPHIATLLKEVTVKMLHVLDAIGKHEPVNGITIASET
GIPKGSVSKMTRRLMNKNLIVTETIPNNKKEILFKTTSLGKELFHLHQALHQEINKGVVQFLSRYTQEELQFVTRFLSDT
LEASWVTMEENLVDENKNHKG

Sequences:

>Translated_181_residues
MASAFNNDKNILIKQIVNLTGELAKKWGQEEDEEREWLLQNCKNPHIATLLKEVTVKMLHVLDAIGKHEPVNGITIASET
GIPKGSVSKMTRRLMNKNLIVTETIPNNKKEILFKTTSLGKELFHLHQALHQEINKGVVQFLSRYTQEELQFVTRFLSDT
LEASWVTMEENLVDENKNHKG
>Mature_180_residues
ASAFNNDKNILIKQIVNLTGELAKKWGQEEDEEREWLLQNCKNPHIATLLKEVTVKMLHVLDAIGKHEPVNGITIASETG
IPKGSVSKMTRRLMNKNLIVTETIPNNKKEILFKTTSLGKELFHLHQALHQEINKGVVQFLSRYTQEELQFVTRFLSDTL
EASWVTMEENLVDENKNHKG

Specific function: Involved in protein secretion [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 20702; Mature: 20571

Theoretical pI: Translated: 7.24; Mature: 7.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASAFNNDKNILIKQIVNLTGELAKKWGQEEDEEREWLLQNCKNPHIATLLKEVTVKMLH
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH
VLDAIGKHEPVNGITIASETGIPKGSVSKMTRRLMNKNLIVTETIPNNKKEILFKTTSLG
HHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHH
KELFHLHQALHQEINKGVVQFLSRYTQEELQFVTRFLSDTLEASWVTMEENLVDENKNHK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
G
C
>Mature Secondary Structure 
ASAFNNDKNILIKQIVNLTGELAKKWGQEEDEEREWLLQNCKNPHIATLLKEVTVKMLH
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH
VLDAIGKHEPVNGITIASETGIPKGSVSKMTRRLMNKNLIVTETIPNNKKEILFKTTSLG
HHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHH
KELFHLHQALHQEINKGVVQFLSRYTQEELQFVTRFLSDTLEASWVTMEENLVDENKNHK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
G
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]