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The map label for this gene is deoC [H]

Identifier: 152975264

GI number: 152975264

Start: 1577181

End: 1577852

Strand: Direct

Name: deoC [H]

Synonym: Bcer98_1469

Alternate gene names: 152975264

Gene position: 1577181-1577852 (Clockwise)

Preceding gene: 152975263

Following gene: 152975265

Centisome position: 38.59

GC content: 36.61

Gene sequence:

>672_bases
ATGAACATTGCAAAGTTAATTGATCATACAGTTTTGAAACCGAATTCTAAAAAAGAAGATGTAATGAAAGTCATTGAAGA
GGCAAAGAAATATAATTTTGCTTCCGTTTGTATTAATCCTACATGGGTAAAATTAGCTGCTGAAGAATTAGCAGGACATG
ATGTGGATGTTTGTACTGTGATTGGATTTCCATTAGGTGCAAATACGACTGAAACAAAAGTATTTGAAACAAAAGATGTA
ATTGCTAAAGGTGCAACGGAAGTAGATATGGTAATCAACGTAGGTGCTTTAAAAGATGGTGATGATGAATTCGTTGAAAA
GGATATTCGTGAAGTTGTACAAGCAGCAAAAGGAAAAGCACTTGTTAAAGTTATTATCGAAACATGCCTATTAACAGATG
AGGAAAAAGTACGTGCTTGTGAATTATCAGTGAAAGCTGGTGCAGATTTTGTAAAAACTTCAACAGGCTTCTCAACTGGT
GGAGCGACTGCTGAAGATATCGCATTAATGCGTAAGACAGTAGGACCAAATGTTGGGGTAAAAGCATCTGGTGGCGTTCG
TACACGTGAAGATGCAGAAAAAATGATTGAAGCTGGTGCTTCAAGAATCGGAGCTAGTGCAAGTGTTGCGATTGTATTAA
ATGACGAAAAAGGCGCTACAGACAATTATTAA

Upstream 100 bases:

>100_bases
TTTTTAAAAACGATAAATGAACATAATTTCAAAAGCGTATTTACATGTGTTCAAATGAGGGTTAAAATGGAGTTGTTAAA
AGAGATAAGGAGTGAAAGAT

Downstream 100 bases:

>100_bases
GTAAAAAATAGATAAGGAGCAATAGATACACATATAGAGTATCTATTGCTTTCCCATTTAAAAAAGTGTAAGCGGATACG
AAGGAGGGGGAGGTTTGTTA

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MNIAKLIDHTVLKPNSKKEDVMKVIEEAKKYNFASVCINPTWVKLAAEELAGHDVDVCTVIGFPLGANTTETKVFETKDV
IAKGATEVDMVINVGALKDGDDEFVEKDIREVVQAAKGKALVKVIIETCLLTDEEKVRACELSVKAGADFVKTSTGFSTG
GATAEDIALMRKTVGPNVGVKASGGVRTREDAEKMIEAGASRIGASASVAIVLNDEKGATDNY

Sequences:

>Translated_223_residues
MNIAKLIDHTVLKPNSKKEDVMKVIEEAKKYNFASVCINPTWVKLAAEELAGHDVDVCTVIGFPLGANTTETKVFETKDV
IAKGATEVDMVINVGALKDGDDEFVEKDIREVVQAAKGKALVKVIIETCLLTDEEKVRACELSVKAGADFVKTSTGFSTG
GATAEDIALMRKTVGPNVGVKASGGVRTREDAEKMIEAGASRIGASASVAIVLNDEKGATDNY
>Mature_223_residues
MNIAKLIDHTVLKPNSKKEDVMKVIEEAKKYNFASVCINPTWVKLAAEELAGHDVDVCTVIGFPLGANTTETKVFETKDV
IAKGATEVDMVINVGALKDGDDEFVEKDIREVVQAAKGKALVKVIIETCLLTDEEKVRACELSVKAGADFVKTSTGFSTG
GATAEDIALMRKTVGPNVGVKASGGVRTREDAEKMIEAGASRIGASASVAIVLNDEKGATDNY

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116063554, Length=187, Percent_Identity=33.1550802139037, Blast_Score=78, Evalue=6e-15,
Organism=Escherichia coli, GI1790841, Length=214, Percent_Identity=37.8504672897196, Blast_Score=105, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI17533015, Length=198, Percent_Identity=31.8181818181818, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI19922098, Length=172, Percent_Identity=33.7209302325581, Blast_Score=67, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 23676; Mature: 23676

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIAKLIDHTVLKPNSKKEDVMKVIEEAKKYNFASVCINPTWVKLAAEELAGHDVDVCTV
CCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHCCCCCCEEEE
IGFPLGANTTETKVFETKDVIAKGATEVDMVINVGALKDGDDEFVEKDIREVVQAAKGKA
EECCCCCCCCCCEEEHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCHH
LVKVIIETCLLTDEEKVRACELSVKAGADFVKTSTGFSTGGATAEDIALMRKTVGPNVGV
HHHHHHHHHHCCCHHHHHHHEEEHHCCCCHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCE
KASGGVRTREDAEKMIEAGASRIGASASVAIVLNDEKGATDNY
ECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCC
>Mature Secondary Structure
MNIAKLIDHTVLKPNSKKEDVMKVIEEAKKYNFASVCINPTWVKLAAEELAGHDVDVCTV
CCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHCCCCCCEEEE
IGFPLGANTTETKVFETKDVIAKGATEVDMVINVGALKDGDDEFVEKDIREVVQAAKGKA
EECCCCCCCCCCEEEHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCHH
LVKVIIETCLLTDEEKVRACELSVKAGADFVKTSTGFSTGGATAEDIALMRKTVGPNVGV
HHHHHHHHHHCCCHHHHHHHEEEHHCCCCHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCE
KASGGVRTREDAEKMIEAGASRIGASASVAIVLNDEKGATDNY
ECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA