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The map label for this gene is dapB [H]

Identifier: 152975056

GI number: 152975056

Start: 1364282

End: 1365082

Strand: Direct

Name: dapB [H]

Synonym: Bcer98_1256

Alternate gene names: 152975056

Gene position: 1364282-1365082 (Clockwise)

Preceding gene: 152975055

Following gene: 152975057

Centisome position: 33.38

GC content: 38.45

Gene sequence:

>801_bases
ATGAAAGACATTAAAGTAATTATTGCAGGACCTAGAGGCCGTATGGGACATGAAGCAGTTCTTCTTATGGAAAGAACACC
GCATTTTCAATTTGTAGCAGCTGTTGACTATAAACATGGTGGGGAAAAGATTTCAGACTTACCAGGAATGCCCGCGTTAG
ATGTTCCGATTTATGAGGATTTACATACTTGTTTAGATGAGATAGAAGCAGATGTGCTGTTAGATTTAACAACACCGGAG
GTAGGCAAGAAGCATGTAACGCTTGCGGTTGAACATGGTCTTCGTTCTGTTATTGGTACAACTGGATTTACAGAAGAAGA
ATTACAGCATTTAACAAATATAGCGAAGGAAAAAGAAGTAGGAACTATTATTGCACCAAACTTTGCAATTGGGGCAGTAT
TGATGATGAAATTTTCTCAAATGGCGGCGAAATATTTCCAAGATGTCGAGATAATTGAATTGCACCATGATCAAAAATTA
GATGCTCCTTCTGGAACGGCTGTAAAAACAGTAGACTTAATTCGCCAACATCGTGAGCCAAAGCAGCAAGGTCATCCAAA
TGAAACAGAACAATTGAAAGGAGTACGTGGGGCAAATGTAGATGGTATTCATATTCATAGCGTACGTTTACCAGGTTTAA
TTGCACATCAGGAAGTTTTATTTGGCGGGGATGGACAAATGTTAACAGTTCGTCATGATTCATTCAATCGAGCTTCCTTC
ATGTCAGGGGTAAAACTTTCTATCGAAACAGTAATGAACTTGGATCATCTTGTATACGGTTTAGAGAATATTATGGATTA
A

Upstream 100 bases:

>100_bases
TAAATATTGATTTAGAAATAGCGCATAACACTGTAATGAATAAATTTAATACACGTGACAAGGATCGTTGGACACGCATT
GAAGAAGGAGAGGAAGAACG

Downstream 100 bases:

>100_bases
GGGAGAGATAACGGATGAAAATTGCCTTAATTGCACATGACAAAAAGAAAGATGATATGGTTTCGTTTGCATACGCATAT
AAACCAATTTTTGAACAACA

Product: dihydrodipicolinate reductase

Products: NA

Alternate protein names: DHPR [H]

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MKDIKVIIAGPRGRMGHEAVLLMERTPHFQFVAAVDYKHGGEKISDLPGMPALDVPIYEDLHTCLDEIEADVLLDLTTPE
VGKKHVTLAVEHGLRSVIGTTGFTEEELQHLTNIAKEKEVGTIIAPNFAIGAVLMMKFSQMAAKYFQDVEIIELHHDQKL
DAPSGTAVKTVDLIRQHREPKQQGHPNETEQLKGVRGANVDGIHIHSVRLPGLIAHQEVLFGGDGQMLTVRHDSFNRASF
MSGVKLSIETVMNLDHLVYGLENIMD

Sequences:

>Translated_266_residues
MKDIKVIIAGPRGRMGHEAVLLMERTPHFQFVAAVDYKHGGEKISDLPGMPALDVPIYEDLHTCLDEIEADVLLDLTTPE
VGKKHVTLAVEHGLRSVIGTTGFTEEELQHLTNIAKEKEVGTIIAPNFAIGAVLMMKFSQMAAKYFQDVEIIELHHDQKL
DAPSGTAVKTVDLIRQHREPKQQGHPNETEQLKGVRGANVDGIHIHSVRLPGLIAHQEVLFGGDGQMLTVRHDSFNRASF
MSGVKLSIETVMNLDHLVYGLENIMD
>Mature_266_residues
MKDIKVIIAGPRGRMGHEAVLLMERTPHFQFVAAVDYKHGGEKISDLPGMPALDVPIYEDLHTCLDEIEADVLLDLTTPE
VGKKHVTLAVEHGLRSVIGTTGFTEEELQHLTNIAKEKEVGTIIAPNFAIGAVLMMKFSQMAAKYFQDVEIIELHHDQKL
DAPSGTAVKTVDLIRQHREPKQQGHPNETEQLKGVRGANVDGIHIHSVRLPGLIAHQEVLFGGDGQMLTVRHDSFNRASF
MSGVKLSIETVMNLDHLVYGLENIMD

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; second step. [C]

COG id: COG0289

COG function: function code E; Dihydrodipicolinate reductase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dihydrodipicolinate reductase family [H]

Homologues:

Organism=Escherichia coli, GI1786214, Length=271, Percent_Identity=28.7822878228782, Blast_Score=100, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022663
- InterPro:   IPR000846
- InterPro:   IPR022664
- InterPro:   IPR011770
- InterPro:   IPR016040 [H]

Pfam domain/function: PF05173 DapB_C; PF01113 DapB_N [H]

EC number: =1.3.1.26 [H]

Molecular weight: Translated: 29429; Mature: 29429

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: PS01298 DAPB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDIKVIIAGPRGRMGHEAVLLMERTPHFQFVAAVDYKHGGEKISDLPGMPALDVPIYED
CCCEEEEEECCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCHHHHCCCCCCCCCCHHHH
LHTCLDEIEADVLLDLTTPEVGKKHVTLAVEHGLRSVIGTTGFTEEELQHLTNIAKEKEV
HHHHHHHCCCCEEEEECCCCCCCCEEEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
GTIIAPNFAIGAVLMMKFSQMAAKYFQDVEIIELHHDQKLDAPSGTAVKTVDLIRQHREP
CEEECCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCH
KQQGHPNETEQLKGVRGANVDGIHIHSVRLPGLIAHQEVLFGGDGQMLTVRHDSFNRASF
HHCCCCCHHHHHCCCCCCCCCCEEEEEEECCCEEECCEEEECCCCCEEEEECCCCCHHHH
MSGVKLSIETVMNLDHLVYGLENIMD
HCCCEEHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKDIKVIIAGPRGRMGHEAVLLMERTPHFQFVAAVDYKHGGEKISDLPGMPALDVPIYED
CCCEEEEEECCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCHHHHCCCCCCCCCCHHHH
LHTCLDEIEADVLLDLTTPEVGKKHVTLAVEHGLRSVIGTTGFTEEELQHLTNIAKEKEV
HHHHHHHCCCCEEEEECCCCCCCCEEEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
GTIIAPNFAIGAVLMMKFSQMAAKYFQDVEIIELHHDQKLDAPSGTAVKTVDLIRQHREP
CEEECCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCH
KQQGHPNETEQLKGVRGANVDGIHIHSVRLPGLIAHQEVLFGGDGQMLTVRHDSFNRASF
HHCCCCCHHHHHCCCCCCCCCCEEEEEEECCCEEECCEEEECCCCCEEEEECCCCCHHHH
MSGVKLSIETVMNLDHLVYGLENIMD
HCCCEEHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA