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The map label for this gene is fni

Identifier: 152975022

GI number: 152975022

Start: 1334855

End: 1335904

Strand: Direct

Name: fni

Synonym: Bcer98_1222

Alternate gene names: 152975022

Gene position: 1334855-1335904 (Clockwise)

Preceding gene: 152975021

Following gene: 152975024

Centisome position: 32.66

GC content: 39.62

Gene sequence:

>1050_bases
GTGGCAAGAGAGAAACGTAAATTAGAACATATTGAATACGCTCTTTCCACTGGACAGTCTCGTACACATGGCTTTTGTGA
TATTGAATTCGTCCATAAAAGCTTACCAAATTCAAGTTTTGAAAGTGTTACATGTGAAACTAAAATCGGCGAACTTTCAC
TAAGTTCGCCGATTTTTATCAATGCGATGACTGGTGGTGGAGGAGAGCGTACATTACACATTAATGAACAACTGGCCTAT
GTAGCAAAACATCATCACCTTGCGATGGCCGTCGGTTCCCAAATGGCAGCGTTAAAAGAGAAAAGAGAAGTAGACTCGTA
TCGAATTGTAAGAAGAGTAAACCCGAATGGTATTGTGTTTGCAAACTTAGGAAGCGAAGCAACAGTTGAACAGGCAAAAT
GTGCTGTTGATATGATTGAAGCGAATGCTTTGCAGATTCATTTAAATGTGATTCAAGAATTAACGATGCCAGAAGGAGAT
CGAGATTTTAAAGGTGTATTAAAACGAATTGAAAACATTGTCCTTACTTCTGAAGTTCCTGTTATTGTGAAGGAAGTAGG
ATTTGGGATGAGTAAAGAAACGGTTCAGCAGTTAGCTAACATAGGTGTAACAGCGATAGATATTGGTGGTCAAGGCGGTA
CAAACTTTGCTGCTGTAGAAAATGAAAGAAGAAACCGTATGCTCTCTTACTTTAATGATTGGGGCATTCAAACAGCTTCT
TCTATAATAGAAGCATCCTCTACAAACAATACCCTCTCTCTCATTGCATCAGGTGGAATCCAAACGGCACTTGATGTAGC
CAAAGCGATTGCTTTAGGAGCACAGGCAACGGCTTTTGCGGGCTATTTTTTGCGGATATTGATGAATGAAGGCATGGATA
CATTAATCGAAGAAGTAGAATTGTTACATACCGATTTACGATTTATCATGACAGCTCTTGGGGCGAAGAACATTTTAGAA
CTCCAGCAAGTTCCTCTTGTTGTGAAAGGTGATACATATCATTGGTTAACGCAGCGTGGCATTGATACGATGTATTATAG
TCAGAGGTAA

Upstream 100 bases:

>100_bases
TTATAGTCAATATGAGCCAACTTCTGAGTCTGCAACTTTCCAATTTAGTGATATTATTGGAGAACAATTGAAAAAATTAA
AGAAATAAAGAGGGATATAA

Downstream 100 bases:

>100_bases
CAGGGAATCTTTTTAATCTTTTATCCCGCTATTTTCGGGTAGTAAGACTCCCACCTCAAGATGCAGAAAGAAGCAAGGAA
GATAGGTGGGAGTAGGGCTG

Product: isopentenyl pyrophosphate isomerase

Products: NA

Alternate protein names: IPP isomerase; Isopentenyl pyrophosphate isomerase

Number of amino acids: Translated: 349; Mature: 348

Protein sequence:

>349_residues
MAREKRKLEHIEYALSTGQSRTHGFCDIEFVHKSLPNSSFESVTCETKIGELSLSSPIFINAMTGGGGERTLHINEQLAY
VAKHHHLAMAVGSQMAALKEKREVDSYRIVRRVNPNGIVFANLGSEATVEQAKCAVDMIEANALQIHLNVIQELTMPEGD
RDFKGVLKRIENIVLTSEVPVIVKEVGFGMSKETVQQLANIGVTAIDIGGQGGTNFAAVENERRNRMLSYFNDWGIQTAS
SIIEASSTNNTLSLIASGGIQTALDVAKAIALGAQATAFAGYFLRILMNEGMDTLIEEVELLHTDLRFIMTALGAKNILE
LQQVPLVVKGDTYHWLTQRGIDTMYYSQR

Sequences:

>Translated_349_residues
MAREKRKLEHIEYALSTGQSRTHGFCDIEFVHKSLPNSSFESVTCETKIGELSLSSPIFINAMTGGGGERTLHINEQLAY
VAKHHHLAMAVGSQMAALKEKREVDSYRIVRRVNPNGIVFANLGSEATVEQAKCAVDMIEANALQIHLNVIQELTMPEGD
RDFKGVLKRIENIVLTSEVPVIVKEVGFGMSKETVQQLANIGVTAIDIGGQGGTNFAAVENERRNRMLSYFNDWGIQTAS
SIIEASSTNNTLSLIASGGIQTALDVAKAIALGAQATAFAGYFLRILMNEGMDTLIEEVELLHTDLRFIMTALGAKNILE
LQQVPLVVKGDTYHWLTQRGIDTMYYSQR
>Mature_348_residues
AREKRKLEHIEYALSTGQSRTHGFCDIEFVHKSLPNSSFESVTCETKIGELSLSSPIFINAMTGGGGERTLHINEQLAYV
AKHHHLAMAVGSQMAALKEKREVDSYRIVRRVNPNGIVFANLGSEATVEQAKCAVDMIEANALQIHLNVIQELTMPEGDR
DFKGVLKRIENIVLTSEVPVIVKEVGFGMSKETVQQLANIGVTAIDIGGQGGTNFAAVENERRNRMLSYFNDWGIQTASS
IIEASSTNNTLSLIASGGIQTALDVAKAIALGAQATAFAGYFLRILMNEGMDTLIEEVELLHTDLRFIMTALGAKNILEL
QQVPLVVKGDTYHWLTQRGIDTMYYSQR

Specific function: Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP)

COG id: COG1304

COG function: function code C; L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IPP isomerase type 2 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IDI2_BACCN (A7GN36)

Other databases:

- EMBL:   CP000764
- RefSeq:   YP_001374539.1
- ProteinModelPortal:   A7GN36
- SMR:   A7GN36
- STRING:   A7GN36
- EnsemblBacteria:   EBBACT00000036514
- GeneID:   5345079
- GenomeReviews:   CP000764_GR
- KEGG:   bcy:Bcer98_1222
- eggNOG:   COG1304
- GeneTree:   EBGT00050000001841
- HOGENOM:   HBG354479
- OMA:   GSQRAAI
- ProtClustDB:   PRK05437
- BioCyc:   BCER315749:BCER98_1222-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00354
- InterPro:   IPR013785
- InterPro:   IPR000262
- InterPro:   IPR011179
- Gene3D:   G3DSA:3.20.20.70
- PANTHER:   PTHR10578:SF3
- PIRSF:   PIRSF003314
- TIGRFAMs:   TIGR02151

Pfam domain/function: PF01070 FMN_dh

EC number: =5.3.3.2

Molecular weight: Translated: 38359; Mature: 38228

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAREKRKLEHIEYALSTGQSRTHGFCDIEFVHKSLPNSSFESVTCETKIGELSLSSPIFI
CCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEEEECCEECCCCEEE
NAMTGGGGERTLHINEQLAYVAKHHHLAMAVGSQMAALKEKREVDSYRIVRRVNPNGIVF
EEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEEECCCCEEE
ANLGSEATVEQAKCAVDMIEANALQIHLNVIQELTMPEGDRDFKGVLKRIENIVLTSEVP
EECCCCHHHHHHHHHHHHHHCCEEEEEHHHHHHHCCCCCCCHHHHHHHHHHHEEECCCCC
VIVKEVGFGMSKETVQQLANIGVTAIDIGGQGGTNFAAVENERRNRMLSYFNDWGIQTAS
HHHHHHCCCCCHHHHHHHHHCCEEEEEECCCCCCCCCEECCHHHHHHHHHHHHCCHHHHH
SIIEASSTNNTLSLIASGGIQTALDVAKAIALGAQATAFAGYFLRILMNEGMDTLIEEVE
HHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHH
LLHTDLRFIMTALGAKNILELQQVPLVVKGDTYHWLTQRGIDTMYYSQR
HHHHHHHHHHHHHCHHHHHHHHHCCEEEECCCCHHHHHCCCCCHHCCCC
>Mature Secondary Structure 
AREKRKLEHIEYALSTGQSRTHGFCDIEFVHKSLPNSSFESVTCETKIGELSLSSPIFI
CCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEEEECCEECCCCEEE
NAMTGGGGERTLHINEQLAYVAKHHHLAMAVGSQMAALKEKREVDSYRIVRRVNPNGIVF
EEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEEECCCCEEE
ANLGSEATVEQAKCAVDMIEANALQIHLNVIQELTMPEGDRDFKGVLKRIENIVLTSEVP
EECCCCHHHHHHHHHHHHHHCCEEEEEHHHHHHHCCCCCCCHHHHHHHHHHHEEECCCCC
VIVKEVGFGMSKETVQQLANIGVTAIDIGGQGGTNFAAVENERRNRMLSYFNDWGIQTAS
HHHHHHCCCCCHHHHHHHHHCCEEEEEECCCCCCCCCEECCHHHHHHHHHHHHCCHHHHH
SIIEASSTNNTLSLIASGGIQTALDVAKAIALGAQATAFAGYFLRILMNEGMDTLIEEVE
HHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHH
LLHTDLRFIMTALGAKNILELQQVPLVVKGDTYHWLTQRGIDTMYYSQR
HHHHHHHHHHHHHCHHHHHHHHHCCEEEECCCCHHHHHCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA