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The map label for this gene is sodF [H]

Identifier: 152974992

GI number: 152974992

Start: 1306134

End: 1307048

Strand: Direct

Name: sodF [H]

Synonym: Bcer98_1192

Alternate gene names: 152974992

Gene position: 1306134-1307048 (Clockwise)

Preceding gene: 152974991

Following gene: 152974993

Centisome position: 31.96

GC content: 36.39

Gene sequence:

>915_bases
ATGAGCCAACAAGGTGTATTTACCGATTACTTTCATGAAGTAGAGAGCTGGTGTGAAAGTGTTCTAGATGTATTAGATAG
CCGTGCAATGGAAGTATACGATGTCCATATGCTTGCTTATAAAATTCAAAGCTTGTTAGAACGTATGAAAGAAAATGAAT
ACGAGACAGACGCAGAATTTCTATATGAAATTAGCGAGGATGTAGAACATATACAACATCATTTACAAGAAGTATTTATG
CAAGAAGAGGAACAATGTGAATTATATGAACGAACGTATTTAGATAGATCGGTTCCAATTGGAGGACATACATTGCCTCC
ATTACCGTATCCATATCATGATTTGGAACCTTATATTTCCAGAGAGGTTATGATGTTGCATCATGATAAGCATCATCGTA
GTTATGTAGAAGGGTTAAATAAAGCGGAGAAAATGATGGAGGAAGCACGGAGGACAAATAAATTTGATTTAATTAAACAT
TGGGAAAGAGAAGCTGCCTTTCATGGTTCAGGGCATTATTTACACACGATATTTTGGAATAATATGAAAAAAGATGGCGG
CGGGAGTCCAAGGGGGGAATTATCAGAAGAAATCGAAAAAAATTTCGGGAGCTTTTTACGTTTTCAAAAGCATTTTACAG
AAGCTGCATCAAAAGTAGAAGGGGCTGGTTGGGCGATTCTTGTTTGGGTCCCGCGTTCAGGAAGGTTAGAGATTCTACAG
AGTACATTGCATCAATTATTTACCCAGTGGGATACAGTACCATTACTGGTGCTTGATGTATGGGAACATGCTTATTATTT
ACAATACAAAAATAAAAAAGAAGAATATATTAAAAATTGGTGGAATGTTGTAAATTGGCCAGATGTACAAAAGAGATTTG
AGCAAGCGAAACAATTGGAATGGATTCCGTATTAG

Upstream 100 bases:

>100_bases
AAGAAGCTAGAAGAAACCTAGCTTCTTTTCCTTGTTTAGACGGTATATAAGAGAATGATGGTGAATATAGTTAAAGTGGA
TAGCATCGAGGAGGTGTGAC

Downstream 100 bases:

>100_bases
ACGCATGTTTGTGCGTCTTTTCTTGTGGTGGCAGAAAGAATATTTTATTCATATTTTAAAAGGCCAAGCATACACTTGTA
CAAAAAAGTGCCAAAAGGAC

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 303

Protein sequence:

>304_residues
MSQQGVFTDYFHEVESWCESVLDVLDSRAMEVYDVHMLAYKIQSLLERMKENEYETDAEFLYEISEDVEHIQHHLQEVFM
QEEEQCELYERTYLDRSVPIGGHTLPPLPYPYHDLEPYISREVMMLHHDKHHRSYVEGLNKAEKMMEEARRTNKFDLIKH
WEREAAFHGSGHYLHTIFWNNMKKDGGGSPRGELSEEIEKNFGSFLRFQKHFTEAASKVEGAGWAILVWVPRSGRLEILQ
STLHQLFTQWDTVPLLVLDVWEHAYYLQYKNKKEEYIKNWWNVVNWPDVQKRFEQAKQLEWIPY

Sequences:

>Translated_304_residues
MSQQGVFTDYFHEVESWCESVLDVLDSRAMEVYDVHMLAYKIQSLLERMKENEYETDAEFLYEISEDVEHIQHHLQEVFM
QEEEQCELYERTYLDRSVPIGGHTLPPLPYPYHDLEPYISREVMMLHHDKHHRSYVEGLNKAEKMMEEARRTNKFDLIKH
WEREAAFHGSGHYLHTIFWNNMKKDGGGSPRGELSEEIEKNFGSFLRFQKHFTEAASKVEGAGWAILVWVPRSGRLEILQ
STLHQLFTQWDTVPLLVLDVWEHAYYLQYKNKKEEYIKNWWNVVNWPDVQKRFEQAKQLEWIPY
>Mature_303_residues
SQQGVFTDYFHEVESWCESVLDVLDSRAMEVYDVHMLAYKIQSLLERMKENEYETDAEFLYEISEDVEHIQHHLQEVFMQ
EEEQCELYERTYLDRSVPIGGHTLPPLPYPYHDLEPYISREVMMLHHDKHHRSYVEGLNKAEKMMEEARRTNKFDLIKHW
EREAAFHGSGHYLHTIFWNNMKKDGGGSPRGELSEEIEKNFGSFLRFQKHFTEAASKVEGAGWAILVWVPRSGRLEILQS
TLHQLFTQWDTVPLLVLDVWEHAYYLQYKNKKEEYIKNWWNVVNWPDVQKRFEQAKQLEWIPY

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=198, Percent_Identity=43.9393939393939, Blast_Score=175, Evalue=5e-44,
Organism=Homo sapiens, GI67782305, Length=198, Percent_Identity=43.9393939393939, Blast_Score=175, Evalue=5e-44,
Organism=Homo sapiens, GI67782309, Length=198, Percent_Identity=37.3737373737374, Blast_Score=129, Evalue=4e-30,
Organism=Escherichia coli, GI1790342, Length=208, Percent_Identity=35.5769230769231, Blast_Score=138, Evalue=5e-34,
Organism=Escherichia coli, GI1787946, Length=189, Percent_Identity=37.037037037037, Blast_Score=133, Evalue=2e-32,
Organism=Caenorhabditis elegans, GI17506561, Length=198, Percent_Identity=42.4242424242424, Blast_Score=169, Evalue=2e-42,
Organism=Caenorhabditis elegans, GI17569479, Length=215, Percent_Identity=40, Blast_Score=164, Evalue=4e-41,
Organism=Saccharomyces cerevisiae, GI6321796, Length=206, Percent_Identity=38.3495145631068, Blast_Score=146, Evalue=4e-36,
Organism=Drosophila melanogaster, GI17136812, Length=200, Percent_Identity=41.5, Blast_Score=164, Evalue=5e-41,

Paralogues:

None

Copy number: 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 36520; Mature: 36388

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQQGVFTDYFHEVESWCESVLDVLDSRAMEVYDVHMLAYKIQSLLERMKENEYETDAEF
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
LYEISEDVEHIQHHLQEVFMQEEEQCELYERTYLDRSVPIGGHTLPPLPYPYHDLEPYIS
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHH
REVMMLHHDKHHRSYVEGLNKAEKMMEEARRTNKFDLIKHWEREAAFHGSGHYLHTIFWN
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCEEEEEEEC
NMKKDGGGSPRGELSEEIEKNFGSFLRFQKHFTEAASKVEGAGWAILVWVPRSGRLEILQ
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHH
STLHQLFTQWDTVPLLVLDVWEHAYYLQYKNKKEEYIKNWWNVVNWPDVQKRFEQAKQLE
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCC
WIPY
CCCC
>Mature Secondary Structure 
SQQGVFTDYFHEVESWCESVLDVLDSRAMEVYDVHMLAYKIQSLLERMKENEYETDAEF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
LYEISEDVEHIQHHLQEVFMQEEEQCELYERTYLDRSVPIGGHTLPPLPYPYHDLEPYIS
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHH
REVMMLHHDKHHRSYVEGLNKAEKMMEEARRTNKFDLIKHWEREAAFHGSGHYLHTIFWN
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCEEEEEEEC
NMKKDGGGSPRGELSEEIEKNFGSFLRFQKHFTEAASKVEGAGWAILVWVPRSGRLEILQ
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHH
STLHQLFTQWDTVPLLVLDVWEHAYYLQYKNKKEEYIKNWWNVVNWPDVQKRFEQAKQLE
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCC
WIPY
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]