BacMap

Definition	Bacillus cereus subsp. cytotoxis NVH 391-98, complete genome.
Accession	NC_009674
Length	4,087,024

Click here to switch to the map view.

The map label for this gene is yocR [H]

Identifier: 152974954

GI number: 152974954

Start: 1261323

End: 1262678

Strand: Direct

Name: yocR [H]

Synonym: Bcer98_1151

Alternate gene names: 152974954

Gene position: 1261323-1262678 (Clockwise)

Preceding gene: 152974953

Following gene: 152974956

Centisome position: 30.86

GC content: 35.47

Gene sequence:

>1356_bases
ATGATGAAAGACAAACAACAATGGACGTCGAAAATTGGTTTTGTACTCGCAGCTGCTGGGGCCGCAGTAGGACTTGGAGC
AATATGGAAGTTTCCGTATGTGGCAGGTAATGGAGGGGGCGGCGCGTTTTTCTTAGTCTTTTTGCTGTTAACATTATTTA
TTGGTATGCCTCTTTTATTAGCGGAATTTGTCATTGGACGTAGTACACAAAAAGAAGCTGTGACAGCTTATAAAGTATTA
GTACCAAATAGTAAGTTATATCCATGGATCGGCCGCATAGGAGTTGTCACTTGTTTTAGTGTTCTATCTTTTTATAGTGT
TGTAGGCGGTTGGATTTTACTATATTTATATTTTAGTTTGACAGGTACTTTTTGGGAGGAAGGAGTAAACTATGGTGAAG
TGTTTGGAGCAACAATTTCGAATCCTACAAGTGCAGTTGGAGCACAACTTCTCTTCATGCTTTGCACTATTTTCGTTGTG
AGTAAAGGGGTGGAGAAAGGGATTGAAAAGGCAAGTAAATATATGATGCCGCTCTTATTTGTTTTATTTGTTACGATTAT
TATTCGTGCGCTTACGCTGGATGGTGCTTTTGCTGGGGTCGAATTTTTCTTAAAACCAGATTTTTCAAAGCTAACGGCAG
ATACGATTCTATATGCAATGGGACAATCTTTCTTTTCGTTAACAGTGGGCGCATCTGTCATGGTTACGTATAGTTCGTAT
TTAAAGAAAGAAGAACATTTAGCGAAATCAGCAACATCGATTGTAAGTTTAACGGTATTTATTACAGTGCTTGCCGGTTT
AGCTATTTTTCCAGCTATCTTTGCATTAGGGGTTAAACCAACAGAAGGACCAGGATTATTATTTATTATTCTTCCGGCTG
TATTTGCCAAAATACCGTTTGGACAATTTTTCTTTATTATGTTTTTGATCTTATTTTTCTTTGCCACATTAACTTCAGCT
ATTTCAATGCTTGAAATTGTTGTTGCTTCTACAGCGAAAGATCATGTAAAGAAACGTCCTTCTGTATCTTTCATCATTGG
TTTACTTATTTTTGCTGCTGGAATTCCATCTGCATTATCATTTGGGATTATGAGTGACGTTAAGATATTTGGAAAGACAT
TTTTTGATTTAGTTGACTTTGCAGTTAGCAATATTTTGCTTCCATTAGGTGTATTAGCTATTTCGCTATTTGTGCCAAAT
AAAATGCGTAAAGATTTACTGATGAAAGAATTAGAAGTTACGGAAAGAAGAGGGAAAACATTATTTAACATTTGGTTTTT
CTTACTTCGTTACATTATCCCAGTAACAGTTATCATTGTATTTTTAAATGCAATTGGTATATTTAAAATGTTATAA

Upstream 100 bases:

>100_bases
AGCGTGTGGAGGACTTTTTTTATTTTAAAAAGGGGGTGCGCGAGTATGAAATGAAAGGGTATAATTTACAAAAGTAAGAA
AATTCAGAAAAGGAGAATAT

Downstream 100 bases:

>100_bases
AACAAAGTAAAACTTTAATTCAGTAGGTGCTTTTCCATCGCCTATTGATTATGAGTTTGGTGCTTGTTTGTCTAATGAAC
GGTTATAGGCTTTGTAAGTA

Product: sodium:neurotransmitter symporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 451; Mature: 451

Protein sequence:

>451_residues
MMKDKQQWTSKIGFVLAAAGAAVGLGAIWKFPYVAGNGGGGAFFLVFLLLTLFIGMPLLLAEFVIGRSTQKEAVTAYKVL
VPNSKLYPWIGRIGVVTCFSVLSFYSVVGGWILLYLYFSLTGTFWEEGVNYGEVFGATISNPTSAVGAQLLFMLCTIFVV
SKGVEKGIEKASKYMMPLLFVLFVTIIIRALTLDGAFAGVEFFLKPDFSKLTADTILYAMGQSFFSLTVGASVMVTYSSY
LKKEEHLAKSATSIVSLTVFITVLAGLAIFPAIFALGVKPTEGPGLLFIILPAVFAKIPFGQFFFIMFLILFFFATLTSA
ISMLEIVVASTAKDHVKKRPSVSFIIGLLIFAAGIPSALSFGIMSDVKIFGKTFFDLVDFAVSNILLPLGVLAISLFVPN
KMRKDLLMKELEVTERRGKTLFNIWFFLLRYIIPVTVIIVFLNAIGIFKML

Sequences:

>Translated_451_residues
MMKDKQQWTSKIGFVLAAAGAAVGLGAIWKFPYVAGNGGGGAFFLVFLLLTLFIGMPLLLAEFVIGRSTQKEAVTAYKVL
VPNSKLYPWIGRIGVVTCFSVLSFYSVVGGWILLYLYFSLTGTFWEEGVNYGEVFGATISNPTSAVGAQLLFMLCTIFVV
SKGVEKGIEKASKYMMPLLFVLFVTIIIRALTLDGAFAGVEFFLKPDFSKLTADTILYAMGQSFFSLTVGASVMVTYSSY
LKKEEHLAKSATSIVSLTVFITVLAGLAIFPAIFALGVKPTEGPGLLFIILPAVFAKIPFGQFFFIMFLILFFFATLTSA
ISMLEIVVASTAKDHVKKRPSVSFIIGLLIFAAGIPSALSFGIMSDVKIFGKTFFDLVDFAVSNILLPLGVLAISLFVPN
KMRKDLLMKELEVTERRGKTLFNIWFFLLRYIIPVTVIIVFLNAIGIFKML
>Mature_451_residues
MMKDKQQWTSKIGFVLAAAGAAVGLGAIWKFPYVAGNGGGGAFFLVFLLLTLFIGMPLLLAEFVIGRSTQKEAVTAYKVL
VPNSKLYPWIGRIGVVTCFSVLSFYSVVGGWILLYLYFSLTGTFWEEGVNYGEVFGATISNPTSAVGAQLLFMLCTIFVV
SKGVEKGIEKASKYMMPLLFVLFVTIIIRALTLDGAFAGVEFFLKPDFSKLTADTILYAMGQSFFSLTVGASVMVTYSSY
LKKEEHLAKSATSIVSLTVFITVLAGLAIFPAIFALGVKPTEGPGLLFIILPAVFAKIPFGQFFFIMFLILFFFATLTSA
ISMLEIVVASTAKDHVKKRPSVSFIIGLLIFAAGIPSALSFGIMSDVKIFGKTFFDLVDFAVSNILLPLGVLAISLFVPN
KMRKDLLMKELEVTERRGKTLFNIWFFLLRYIIPVTVIIVFLNAIGIFKML

Specific function: Putative sodium-dependent transporter [H]

COG id: COG0733

COG function: function code R; Na+-dependent transporters of the SNF family

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family [H]

Homologues:

Organism=Homo sapiens, GI171184408, Length=380, Percent_Identity=27.8947368421053, Blast_Score=132, Evalue=9e-31,
Organism=Homo sapiens, GI171184406, Length=380, Percent_Identity=27.8947368421053, Blast_Score=132, Evalue=9e-31,
Organism=Homo sapiens, GI171184404, Length=380, Percent_Identity=27.8947368421053, Blast_Score=132, Evalue=9e-31,
Organism=Homo sapiens, GI21361581, Length=412, Percent_Identity=26.9417475728155, Blast_Score=129, Evalue=8e-30,
Organism=Homo sapiens, GI4507043, Length=397, Percent_Identity=26.9521410579345, Blast_Score=128, Evalue=1e-29,
Organism=Homo sapiens, GI289191351, Length=402, Percent_Identity=26.1194029850746, Blast_Score=119, Evalue=8e-27,
Organism=Homo sapiens, GI4557046, Length=402, Percent_Identity=26.1194029850746, Blast_Score=119, Evalue=8e-27,
Organism=Homo sapiens, GI289191377, Length=402, Percent_Identity=26.1194029850746, Blast_Score=119, Evalue=8e-27,
Organism=Homo sapiens, GI4507041, Length=383, Percent_Identity=26.3707571801567, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI188528618, Length=378, Percent_Identity=22.7513227513227, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI7657587, Length=388, Percent_Identity=23.9690721649485, Blast_Score=113, Evalue=3e-25,
Organism=Homo sapiens, GI134304856, Length=403, Percent_Identity=27.7915632754342, Blast_Score=111, Evalue=2e-24,
Organism=Homo sapiens, GI51468073, Length=299, Percent_Identity=28.0936454849498, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI58219014, Length=303, Percent_Identity=28.7128712871287, Blast_Score=110, Evalue=3e-24,
Organism=Homo sapiens, GI197276623, Length=352, Percent_Identity=25.5681818181818, Blast_Score=109, Evalue=6e-24,
Organism=Homo sapiens, GI54607094, Length=352, Percent_Identity=25.5681818181818, Blast_Score=109, Evalue=6e-24,
Organism=Homo sapiens, GI33354281, Length=301, Percent_Identity=26.578073089701, Blast_Score=107, Evalue=3e-23,
Organism=Homo sapiens, GI194018524, Length=299, Percent_Identity=27.7591973244147, Blast_Score=96, Evalue=6e-20,
Organism=Homo sapiens, GI11181770, Length=298, Percent_Identity=25.8389261744966, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI67782317, Length=426, Percent_Identity=23.2394366197183, Blast_Score=90, Evalue=5e-18,
Organism=Homo sapiens, GI67782313, Length=426, Percent_Identity=23.2394366197183, Blast_Score=89, Evalue=6e-18,
Organism=Homo sapiens, GI67782315, Length=426, Percent_Identity=23.2394366197183, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI5032097, Length=351, Percent_Identity=24.2165242165242, Blast_Score=86, Evalue=7e-17,
Organism=Homo sapiens, GI21361693, Length=116, Percent_Identity=34.4827586206897, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI218563756, Length=343, Percent_Identity=24.7813411078717, Blast_Score=84, Evalue=4e-16,
Organism=Homo sapiens, GI197276625, Length=116, Percent_Identity=35.3448275862069, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI92859670, Length=221, Percent_Identity=25.7918552036199, Blast_Score=76, Evalue=5e-14,
Organism=Homo sapiens, GI12408638, Length=273, Percent_Identity=24.5421245421245, Blast_Score=76, Evalue=8e-14,
Organism=Homo sapiens, GI289191353, Length=214, Percent_Identity=28.0373831775701, Blast_Score=73, Evalue=5e-13,
Organism=Homo sapiens, GI55749589, Length=112, Percent_Identity=29.4642857142857, Blast_Score=69, Evalue=1e-11,
Organism=Homo sapiens, GI300360519, Length=227, Percent_Identity=25.9911894273128, Blast_Score=68, Evalue=2e-11,
Organism=Homo sapiens, GI6005715, Length=174, Percent_Identity=23.5632183908046, Blast_Score=66, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI25146584, Length=412, Percent_Identity=26.9417475728155, Blast_Score=124, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI133952791, Length=407, Percent_Identity=25.7985257985258, Blast_Score=120, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI17554804, Length=486, Percent_Identity=23.4567901234568, Blast_Score=109, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI71995588, Length=420, Percent_Identity=23.3333333333333, Blast_Score=91, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17555248, Length=117, Percent_Identity=37.6068376068376, Blast_Score=85, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI115534083, Length=439, Percent_Identity=23.0068337129841, Blast_Score=77, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17569475, Length=421, Percent_Identity=20.9026128266033, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17542050, Length=160, Percent_Identity=30.625, Blast_Score=65, Evalue=7e-11,
Organism=Drosophila melanogaster, GI17136952, Length=436, Percent_Identity=25.2293577981651, Blast_Score=149, Evalue=4e-36,
Organism=Drosophila melanogaster, GI281364394, Length=441, Percent_Identity=25.3968253968254, Blast_Score=147, Evalue=1e-35,
Organism=Drosophila melanogaster, GI28574704, Length=441, Percent_Identity=25.3968253968254, Blast_Score=147, Evalue=1e-35,
Organism=Drosophila melanogaster, GI17136950, Length=441, Percent_Identity=25.3968253968254, Blast_Score=147, Evalue=1e-35,
Organism=Drosophila melanogaster, GI28574702, Length=441, Percent_Identity=25.3968253968254, Blast_Score=147, Evalue=1e-35,
Organism=Drosophila melanogaster, GI24762620, Length=413, Percent_Identity=27.1186440677966, Blast_Score=121, Evalue=1e-27,
Organism=Drosophila melanogaster, GI45551088, Length=441, Percent_Identity=26.0770975056689, Blast_Score=118, Evalue=7e-27,
Organism=Drosophila melanogaster, GI281365034, Length=517, Percent_Identity=25.531914893617, Blast_Score=118, Evalue=8e-27,
Organism=Drosophila melanogaster, GI24652942, Length=441, Percent_Identity=26.0770975056689, Blast_Score=118, Evalue=9e-27,
Organism=Drosophila melanogaster, GI19921936, Length=400, Percent_Identity=25.5, Blast_Score=117, Evalue=2e-26,
Organism=Drosophila melanogaster, GI45550877, Length=432, Percent_Identity=22.6851851851852, Blast_Score=113, Evalue=3e-25,
Organism=Drosophila melanogaster, GI45551183, Length=426, Percent_Identity=22.7699530516432, Blast_Score=111, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24661428, Length=382, Percent_Identity=25.9162303664921, Blast_Score=111, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24582567, Length=397, Percent_Identity=26.1964735516373, Blast_Score=107, Evalue=2e-23,
Organism=Drosophila melanogaster, GI24639514, Length=511, Percent_Identity=25.0489236790607, Blast_Score=105, Evalue=5e-23,
Organism=Drosophila melanogaster, GI221329674, Length=510, Percent_Identity=25.4901960784314, Blast_Score=105, Evalue=5e-23,
Organism=Drosophila melanogaster, GI281364136, Length=398, Percent_Identity=24.8743718592965, Blast_Score=101, Evalue=1e-21,
Organism=Drosophila melanogaster, GI281363702, Length=383, Percent_Identity=24.8041775456919, Blast_Score=100, Evalue=3e-21,
Organism=Drosophila melanogaster, GI24655079, Length=297, Percent_Identity=27.9461279461279, Blast_Score=99, Evalue=6e-21,
Organism=Drosophila melanogaster, GI24639516, Length=302, Percent_Identity=28.1456953642384, Blast_Score=95, Evalue=9e-20,
Organism=Drosophila melanogaster, GI24639853, Length=516, Percent_Identity=23.062015503876, Blast_Score=91, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24654186, Length=232, Percent_Identity=32.7586206896552, Blast_Score=87, Evalue=3e-17,
Organism=Drosophila melanogaster, GI19921352, Length=317, Percent_Identity=27.4447949526814, Blast_Score=79, Evalue=8e-15,
Organism=Drosophila melanogaster, GI24584353, Length=317, Percent_Identity=27.4447949526814, Blast_Score=79, Evalue=8e-15,
Organism=Drosophila melanogaster, GI24582569, Length=358, Percent_Identity=24.5810055865922, Blast_Score=67, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000175 [H]

Pfam domain/function: PF00209 SNF [H]

EC number: NA

Molecular weight: Translated: 49367; Mature: 49367

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: PS50267 NA_NEUROTRAN_SYMP_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKDKQQWTSKIGFVLAAAGAAVGLGAIWKFPYVAGNGGGGAFFLVFLLLTLFIGMPLLL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCHHHHHHHHHHHHHHHHHHHHH
AEFVIGRSTQKEAVTAYKVLVPNSKLYPWIGRIGVVTCFSVLSFYSVVGGWILLYLYFSL
HHHHHCCCCHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TGTFWEEGVNYGEVFGATISNPTSAVGAQLLFMLCTIFVVSKGVEKGIEKASKYMMPLLF
HHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLFVTIIIRALTLDGAFAGVEFFLKPDFSKLTADTILYAMGQSFFSLTVGASVMVTYSSY
HHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKKEEHLAKSATSIVSLTVFITVLAGLAIFPAIFALGVKPTEGPGLLFIILPAVFAKIPF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCC
GQFFFIMFLILFFFATLTSAISMLEIVVASTAKDHVKKRPSVSFIIGLLIFAAGIPSALS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHH
FGIMSDVKIFGKTFFDLVDFAVSNILLPLGVLAISLFVPNKMRKDLLMKELEVTERRGKT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCH
LFNIWFFLLRYIIPVTVIIVFLNAIGIFKML
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]