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The map label for this gene is ygbI [C]

Identifier: 152974857

GI number: 152974857

Start: 1171437

End: 1172219

Strand: Direct

Name: ygbI [C]

Synonym: Bcer98_1053

Alternate gene names: 152974857

Gene position: 1171437-1172219 (Clockwise)

Preceding gene: 152974856

Following gene: 152974858

Centisome position: 28.66

GC content: 35.38

Gene sequence:

>783_bases
ATGTCTGTTGCTGGAGAAGAAAGAAAGCGTACTATTCTTGAAAAAGTAGAGTTTAAAGGAAAAGTGAAAGTGTCCGAACT
AGCAAAAGAGTTTTCTGTATCAACCGAAACAATTCGCAGGTATTTAGAAGAATTAGATCGTGAAAAAAAGTTAAAAAAGG
TGTACGGTGGTGCTGTTCAATTGCCAGGAGTAGGTACAGAACCATCTATGTTAGAAAGGGAAATGTTACATATAGAAGAG
AAGAAGCGAATTGGCTATAAAGCAGCGACGTTTGTGGAAGATGGTGATGTTATTGTAATTGATGATGGAAGTACACCACT
CCAAATGGTTCCCTATCTCATACACCGGAAAAATTTAACGATTGTAACAAGTTCCTTTCCAGTTGCAACACAATTGATTT
CTTCTATTAATAAAAATATGTTTCATGGTGAAGTACTCTTTATTGGAGGGAAAGTATCTCCAAAGCATTCTCGTGTATCA
GGTTCTATTTCACAGCAGATGATTCGCCAATTCCATTTTCATAAGGCTTTTATTTCAATCGATGGATTATTACCAAGTTT
CGGAGCATCAAGTTTTGAACTGGAAAAAGCGAAGTTATCAGAGGCGATGATTCAATTAGCAGAAAAAACATTCATTCTTT
GTGATCATACGAAGATTAGTGTGAAAGGAAATTATCGAATTGCAGGGTTTTCTCATATTCAACATGTAATTTGTAATAAA
AGAATGCCGTATAGTTTTGAAGAAGAGATCGCTAAACATCATATTCGGTGGACGATTAGTTAA

Upstream 100 bases:

>100_bases
TATCTTTTGAAATGAAAAAAACGTATTTTGCATAAGAGGAATTCAGCATATAGAGCTGAGAAAAGGGTGCCTATATAAGT
GAAAGAAACGAGGTGAAAGA

Downstream 100 bases:

>100_bases
ATATAAATTGAATTTACACATGAAAAATTGTATTTGTGCAAAAAAATGGACACATTTTCCCAACTTGTTCATATAATTTA
CCAATGAAAAAAAGTTGACT

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 259

Protein sequence:

>260_residues
MSVAGEERKRTILEKVEFKGKVKVSELAKEFSVSTETIRRYLEELDREKKLKKVYGGAVQLPGVGTEPSMLEREMLHIEE
KKRIGYKAATFVEDGDVIVIDDGSTPLQMVPYLIHRKNLTIVTSSFPVATQLISSINKNMFHGEVLFIGGKVSPKHSRVS
GSISQQMIRQFHFHKAFISIDGLLPSFGASSFELEKAKLSEAMIQLAEKTFILCDHTKISVKGNYRIAGFSHIQHVICNK
RMPYSFEEEIAKHHIRWTIS

Sequences:

>Translated_260_residues
MSVAGEERKRTILEKVEFKGKVKVSELAKEFSVSTETIRRYLEELDREKKLKKVYGGAVQLPGVGTEPSMLEREMLHIEE
KKRIGYKAATFVEDGDVIVIDDGSTPLQMVPYLIHRKNLTIVTSSFPVATQLISSINKNMFHGEVLFIGGKVSPKHSRVS
GSISQQMIRQFHFHKAFISIDGLLPSFGASSFELEKAKLSEAMIQLAEKTFILCDHTKISVKGNYRIAGFSHIQHVICNK
RMPYSFEEEIAKHHIRWTIS
>Mature_259_residues
SVAGEERKRTILEKVEFKGKVKVSELAKEFSVSTETIRRYLEELDREKKLKKVYGGAVQLPGVGTEPSMLEREMLHIEEK
KRIGYKAATFVEDGDVIVIDDGSTPLQMVPYLIHRKNLTIVTSSFPVATQLISSINKNMFHGEVLFIGGKVSPKHSRVSG
SISQQMIRQFHFHKAFISIDGLLPSFGASSFELEKAKLSEAMIQLAEKTFILCDHTKISVKGNYRIAGFSHIQHVICNKR
MPYSFEEEIAKHHIRWTIS

Specific function: Unknown

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI226510968, Length=250, Percent_Identity=31.2, Blast_Score=118, Evalue=5e-28,
Organism=Escherichia coli, GI1789059, Length=254, Percent_Identity=27.9527559055118, Blast_Score=111, Evalue=4e-26,
Organism=Escherichia coli, GI1788069, Length=239, Percent_Identity=31.7991631799163, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1789829, Length=250, Percent_Identity=28, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1787540, Length=239, Percent_Identity=30.5439330543933, Blast_Score=104, Evalue=7e-24,
Organism=Escherichia coli, GI1789519, Length=251, Percent_Identity=24.3027888446215, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI87082344, Length=257, Percent_Identity=24.9027237354086, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1790753, Length=176, Percent_Identity=26.7045454545455, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1790635, Length=243, Percent_Identity=27.9835390946502, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1787063, Length=224, Percent_Identity=25.8928571428571, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 29467; Mature: 29335

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVAGEERKRTILEKVEFKGKVKVSELAKEFSVSTETIRRYLEELDREKKLKKVYGGAVQ
CCCCCHHHHHHHHHHHHCCCCEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCEEE
LPGVGTEPSMLEREMLHIEEKKRIGYKAATFVEDGDVIVIDDGSTPLQMVPYLIHRKNLT
CCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEECCCCHHHHHHHHHHCCCEE
IVTSSFPVATQLISSINKNMFHGEVLFIGGKVSPKHSRVSGSISQQMIRQFHFHKAFISI
EEECCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHCCHHHHHHHHHHHHHHHEEEE
DGLLPSFGASSFELEKAKLSEAMIQLAEKTFILCDHTKISVKGNYRIAGFSHIQHVICNK
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEECCEEEEEECCEEEEHHHHHHHHHHCC
RMPYSFEEEIAKHHIRWTIS
CCCCCHHHHHHHHHEEEEEC
>Mature Secondary Structure 
SVAGEERKRTILEKVEFKGKVKVSELAKEFSVSTETIRRYLEELDREKKLKKVYGGAVQ
CCCCHHHHHHHHHHHHCCCCEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCEEE
LPGVGTEPSMLEREMLHIEEKKRIGYKAATFVEDGDVIVIDDGSTPLQMVPYLIHRKNLT
CCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEECCCCHHHHHHHHHHCCCEE
IVTSSFPVATQLISSINKNMFHGEVLFIGGKVSPKHSRVSGSISQQMIRQFHFHKAFISI
EEECCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHCCHHHHHHHHHHHHHHHEEEE
DGLLPSFGASSFELEKAKLSEAMIQLAEKTFILCDHTKISVKGNYRIAGFSHIQHVICNK
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEECCEEEEEECCEEEEHHHHHHHHHHCC
RMPYSFEEEIAKHHIRWTIS
CCCCCHHHHHHHHHEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12950922 [H]