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The map label for this gene is ygbD [C]

Identifier: 152974764

GI number: 152974764

Start: 1070786

End: 1072120

Strand: Direct

Name: ygbD [C]

Synonym: Bcer98_0955

Alternate gene names: 152974764

Gene position: 1070786-1072120 (Clockwise)

Preceding gene: 152974763

Following gene: 152974765

Centisome position: 26.2

GC content: 38.88

Gene sequence:

>1335_bases
GTGAAGTATGTAATTATTGGTGGAGATGCGGCTGGTATGAGTGCGGCGATGCAAATTATTAGAAATGATAAAGATGCACA
TGTGATTACGTTAGAAAAAGGAGAAATTTATTCGTATGCCCAGTGCGGACTCCCCTATGTAATAAGCGGGGCAATTTCTT
CTACGGAAAAATTAATTGCACGCGATGTGAAAACATTTCGTGATAAGTATGGGATTGATGCAAAAGTACACCATGAAGTA
ACAAAGATTGATACGGAACATAAAATGGTGCATGGAATACATACAGATACAAAAGAGGAATTTCAATACGAATATGATCG
CTTATTAATTGCAACAGGAGTTAGACCTGTTATGCCAGATTGGGAAGGGGCTCATTTACAAGGCATTCACCTTCTCAAAA
CGATTCCAGATGCTCATCACATATTAGAGACGTTAAAAGAGAGAAATGTGGAACGAGTGACAATTATCGGTGGTGGAGCG
ATTGGTCTTGAAATGGCGGAAACATTTGTAGAACTTGGAAAAGCGGTGCGAATGATTGAAAGAAACGATCATGTTGGTAC
AATTTATGATGCGGATATGGCAAAGTATATACATGAGGAAGCAGAGAAGCATGGAATTGAAATTTTAACAAATGAAAATG
TGAAAGCTTTTAAAGGGAATGAAAAAGTAGAAGAAATTGAAACAGATAAAGGGACATATGAAACGGATCTTGTCTTAGTA
TCAGTAGGAGTAAAGCCCAATACAGATTTTCTTGCAGGAACGAATATACGTGTAAATCATAAAGGAGCGATAGAAGTAAA
TGCCTATATGCAAACAAATGTGAAAGATGTGTTTGCAGCTGGGGATTGCGCGACTCATTATCATGTCATAAAAGAAATAC
AAGATCATATACCAATCGGGACAACTGCGAATAAACAAGGACGACTTGCGGGATTAAATATGGTTGATAAACGAAGAGCG
TTTAAAGGAACGCTTGGTACAGGAATCATTCAATTTATGGGACTTACACTTGCAAGAACCGGTTTAAATGAAAAAGAAGT
AAACGGATTGAATTTGCCATATGAAACGGTAAAAGTAGATTCGACAAGCAGCGCTGGTTATTATCCGAACGCGGCGCCGC
TTCATGTGAAATTATTGTATCGTTCAGATACGAAACAATTACTTGGGGGACAAGTAATTGGAGCGGAAGGTGTGGATAAG
CGAATTGATGTGATCGCAATGGCGCTTTTTCATAAGATGAGTATTCATGACTTAGAAGATGTGGATTTAAGCTATGCACC
ACCTTATAATAGCGTGTGGGATCCAATCCAACAAGCAGCTCGGCGCGCGAAATAG

Upstream 100 bases:

>100_bases
GAAACAAGAAAGCAAATATTATACTTTGTATAAGAAAAAGGTGTTATTTGTAGAAAATCTGGAAAATGTAAAGAGTAGAG
TAAAATGAAGGAGTGATATA

Downstream 100 bases:

>100_bases
TACTTCTTATCGAAAGGCTATTTTTCATATTCACTCTTGAAAAATATAGTATTTATCGATTATATTTTCATATAGTATTC
ATTTTTATATAATGAAGAAG

Product: FAD-dependent pyridine nucleotide-disulphide oxidoreductase

Products: NA

Alternate protein names: CoA-disulfide reductase; CoADR [H]

Number of amino acids: Translated: 444; Mature: 444

Protein sequence:

>444_residues
MKYVIIGGDAAGMSAAMQIIRNDKDAHVITLEKGEIYSYAQCGLPYVISGAISSTEKLIARDVKTFRDKYGIDAKVHHEV
TKIDTEHKMVHGIHTDTKEEFQYEYDRLLIATGVRPVMPDWEGAHLQGIHLLKTIPDAHHILETLKERNVERVTIIGGGA
IGLEMAETFVELGKAVRMIERNDHVGTIYDADMAKYIHEEAEKHGIEILTNENVKAFKGNEKVEEIETDKGTYETDLVLV
SVGVKPNTDFLAGTNIRVNHKGAIEVNAYMQTNVKDVFAAGDCATHYHVIKEIQDHIPIGTTANKQGRLAGLNMVDKRRA
FKGTLGTGIIQFMGLTLARTGLNEKEVNGLNLPYETVKVDSTSSAGYYPNAAPLHVKLLYRSDTKQLLGGQVIGAEGVDK
RIDVIAMALFHKMSIHDLEDVDLSYAPPYNSVWDPIQQAARRAK

Sequences:

>Translated_444_residues
MKYVIIGGDAAGMSAAMQIIRNDKDAHVITLEKGEIYSYAQCGLPYVISGAISSTEKLIARDVKTFRDKYGIDAKVHHEV
TKIDTEHKMVHGIHTDTKEEFQYEYDRLLIATGVRPVMPDWEGAHLQGIHLLKTIPDAHHILETLKERNVERVTIIGGGA
IGLEMAETFVELGKAVRMIERNDHVGTIYDADMAKYIHEEAEKHGIEILTNENVKAFKGNEKVEEIETDKGTYETDLVLV
SVGVKPNTDFLAGTNIRVNHKGAIEVNAYMQTNVKDVFAAGDCATHYHVIKEIQDHIPIGTTANKQGRLAGLNMVDKRRA
FKGTLGTGIIQFMGLTLARTGLNEKEVNGLNLPYETVKVDSTSSAGYYPNAAPLHVKLLYRSDTKQLLGGQVIGAEGVDK
RIDVIAMALFHKMSIHDLEDVDLSYAPPYNSVWDPIQQAARRAK
>Mature_444_residues
MKYVIIGGDAAGMSAAMQIIRNDKDAHVITLEKGEIYSYAQCGLPYVISGAISSTEKLIARDVKTFRDKYGIDAKVHHEV
TKIDTEHKMVHGIHTDTKEEFQYEYDRLLIATGVRPVMPDWEGAHLQGIHLLKTIPDAHHILETLKERNVERVTIIGGGA
IGLEMAETFVELGKAVRMIERNDHVGTIYDADMAKYIHEEAEKHGIEILTNENVKAFKGNEKVEEIETDKGTYETDLVLV
SVGVKPNTDFLAGTNIRVNHKGAIEVNAYMQTNVKDVFAAGDCATHYHVIKEIQDHIPIGTTANKQGRLAGLNMVDKRRA
FKGTLGTGIIQFMGLTLARTGLNEKEVNGLNLPYETVKVDSTSSAGYYPNAAPLHVKLLYRSDTKQLLGGQVIGAEGVDK
RIDVIAMALFHKMSIHDLEDVDLSYAPPYNSVWDPIQQAARRAK

Specific function: Unknown

COG id: COG0446

COG function: function code R; Uncharacterized NAD(FAD)-dependent dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-III pyridine nucleotide-disulfide oxidoreductase family [H]

Homologues:

Organism=Homo sapiens, GI226437568, Length=327, Percent_Identity=26.9113149847095, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI65787454, Length=327, Percent_Identity=26.9113149847095, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI21389617, Length=327, Percent_Identity=26.9113149847095, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI50301238, Length=253, Percent_Identity=30.0395256916996, Blast_Score=70, Evalue=6e-12,
Organism=Homo sapiens, GI4757732, Length=265, Percent_Identity=25.2830188679245, Blast_Score=69, Evalue=8e-12,
Organism=Homo sapiens, GI22202629, Length=265, Percent_Identity=25.2830188679245, Blast_Score=69, Evalue=8e-12,
Organism=Escherichia coli, GI1789065, Length=283, Percent_Identity=24.7349823321555, Blast_Score=93, Evalue=4e-20,
Organism=Escherichia coli, GI1786307, Length=302, Percent_Identity=28.1456953642384, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1789765, Length=340, Percent_Identity=22.3529411764706, Blast_Score=66, Evalue=5e-12,
Organism=Escherichia coli, GI1789915, Length=185, Percent_Identity=28.6486486486486, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI87082354, Length=298, Percent_Identity=25.1677852348993, Blast_Score=64, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17559934, Length=245, Percent_Identity=28.1632653061224, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI32565766, Length=141, Percent_Identity=32.6241134751773, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI32564386, Length=220, Percent_Identity=26.8181818181818, Blast_Score=65, Evalue=1e-10,
Organism=Drosophila melanogaster, GI24585130, Length=322, Percent_Identity=24.8447204968944, Blast_Score=113, Evalue=3e-25,
Organism=Drosophila melanogaster, GI281359715, Length=323, Percent_Identity=26.9349845201238, Blast_Score=102, Evalue=4e-22,
Organism=Drosophila melanogaster, GI281359713, Length=323, Percent_Identity=26.9349845201238, Blast_Score=102, Evalue=4e-22,
Organism=Drosophila melanogaster, GI24639250, Length=323, Percent_Identity=26.9349845201238, Blast_Score=102, Evalue=4e-22,
Organism=Drosophila melanogaster, GI18543267, Length=323, Percent_Identity=26.9349845201238, Blast_Score=102, Evalue=4e-22,
Organism=Drosophila melanogaster, GI24639252, Length=323, Percent_Identity=26.9349845201238, Blast_Score=102, Evalue=4e-22,
Organism=Drosophila melanogaster, GI24639257, Length=323, Percent_Identity=26.9349845201238, Blast_Score=102, Evalue=4e-22,
Organism=Drosophila melanogaster, GI24581020, Length=363, Percent_Identity=22.8650137741047, Blast_Score=88, Evalue=1e-17,
Organism=Drosophila melanogaster, GI28573993, Length=363, Percent_Identity=22.8650137741047, Blast_Score=87, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017758
- InterPro:   IPR016156
- InterPro:   IPR013027
- InterPro:   IPR004099
- InterPro:   IPR001327 [H]

Pfam domain/function: PF00070 Pyr_redox; PF07992 Pyr_redox_2; PF02852 Pyr_redox_dim [H]

EC number: =1.8.1.14 [H]

Molecular weight: Translated: 49200; Mature: 49200

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYVIIGGDAAGMSAAMQIIRNDKDAHVITLEKGEIYSYAQCGLPYVISGAISSTEKLIA
CEEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCCEEEHHHCCCCEEEECHHHHHHHHHH
RDVKTFRDKYGIDAKVHHEVTKIDTEHKMVHGIHTDTKEEFQYEYDRLLIATGVRPVMPD
HHHHHHHHHHCCCCEEEHHHHHCCCHHHHEECCCCCCHHHHHHHHHEEEEECCCCCCCCC
WEGAHLQGIHLLKTIPDAHHILETLKERNVERVTIIGGGAIGLEMAETFVELGKAVRMIE
CCCCCCCCCHHHHHCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHH
RNDHVGTIYDADMAKYIHEEAEKHGIEILTNENVKAFKGNEKVEEIETDKGTYETDLVLV
CCCCEEEEECHHHHHHHHHHHHHCCEEEEECCCEEEECCCCHHHHHHCCCCCEEEEEEEE
SVGVKPNTDFLAGTNIRVNHKGAIEVNAYMQTNVKDVFAAGDCATHYHVIKEIQDHIPIG
EECCCCCCCEEECCEEEECCCCEEEEEEEEECCHHHHHCCCCHHHHHHHHHHHHHCCCCC
TTANKQGRLAGLNMVDKRRAFKGTLGTGIIQFMGLTLARTGLNEKEVNGLNLPYETVKVD
CCCCCCCCEECCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCEEEEEC
STSSAGYYPNAAPLHVKLLYRSDTKQLLGGQVIGAEGVDKRIDVIAMALFHKMSIHDLED
CCCCCCCCCCCCCEEEEEEEECCHHHHHCCEEECCCCCCHHHHHHHHHHHHHCCCCCCCC
VDLSYAPPYNSVWDPIQQAARRAK
CCCCCCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MKYVIIGGDAAGMSAAMQIIRNDKDAHVITLEKGEIYSYAQCGLPYVISGAISSTEKLIA
CEEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCCEEEHHHCCCCEEEECHHHHHHHHHH
RDVKTFRDKYGIDAKVHHEVTKIDTEHKMVHGIHTDTKEEFQYEYDRLLIATGVRPVMPD
HHHHHHHHHHCCCCEEEHHHHHCCCHHHHEECCCCCCHHHHHHHHHEEEEECCCCCCCCC
WEGAHLQGIHLLKTIPDAHHILETLKERNVERVTIIGGGAIGLEMAETFVELGKAVRMIE
CCCCCCCCCHHHHHCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHH
RNDHVGTIYDADMAKYIHEEAEKHGIEILTNENVKAFKGNEKVEEIETDKGTYETDLVLV
CCCCEEEEECHHHHHHHHHHHHHCCEEEEECCCEEEECCCCHHHHHHCCCCCEEEEEEEE
SVGVKPNTDFLAGTNIRVNHKGAIEVNAYMQTNVKDVFAAGDCATHYHVIKEIQDHIPIG
EECCCCCCCEEECCEEEECCCCEEEEEEEEECCHHHHHCCCCHHHHHHHHHHHHHCCCCC
TTANKQGRLAGLNMVDKRRAFKGTLGTGIIQFMGLTLARTGLNEKEVNGLNLPYETVKVD
CCCCCCCCEECCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCEEEEEC
STSSAGYYPNAAPLHVKLLYRSDTKQLLGGQVIGAEGVDKRIDVIAMALFHKMSIHDLED
CCCCCCCCCCCCCEEEEEEEECCHHHHHCCEEECCCCCCHHHHHHHHHHHHHCCCCCCCC
VDLSYAPPYNSVWDPIQQAARRAK
CCCCCCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA