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The map label for this gene is yrbD [H]

Identifier: 152974366

GI number: 152974366

Start: 616957

End: 618417

Strand: Direct

Name: yrbD [H]

Synonym: Bcer98_0539

Alternate gene names: 152974366

Gene position: 616957-618417 (Clockwise)

Preceding gene: 152974362

Following gene: 152974367

Centisome position: 15.1

GC content: 39.29

Gene sequence:

>1461_bases
GTGGAAGCATTCGTAGGATGGTTAAATCATATTGTTTGGAGTTCTGCGCTTGTTTATTTATGTTTGGGTGCAGGTTTATA
TTTTTCTATTCGAACGAGATTTTTACAACTCAGGCATTTTGGAGAAATGTTGAAACTTACATTTCAGGGGGAAAAGTCAG
AAGCAGGTGTTTCTTCGTTTCAAGCATTAGCACTGTCTTTATCAGGGCGCGTGGGGACGGGAAATATTGCTGGGGTCGCA
ACAGCGATTGCATTTGGGGGTCCAGGAGCCATATTTTGGATGTGGGCAGTGGCCTTTTTAGGTGCGGGATCTTCTTATAT
AGAATCGACACTTGCACAAATATATAAAACGAAACATAAGGGACAATTTCGTGGCGGGCCCGCTTATTATATTGAGAAGG
GGCTAGGACTGAAATGGTATGCGTTATTGTTTGTTATAGCAACTATTCTTGCAACGGGGCTGCTTCTTCCTGGTGTGCAA
GCAAATAGTATTGCGTTAAGTTTAGAAACAGCGTTTGGTGTGAATACATCTGTATCTGGAGTAATATTAGTCGGAATAGT
CGCTCTTATTATCTTTGGTGGAGTAAAGCGTATTGTAAATGTAGCGCAAGTTGTAGTGCCTTTTATGGCAGTTGGTTATA
TTCTCGTAGCTTGTGCAATTATTGTAATGAATATTGAAAAGTTACCAGAAGCATTTATGTTAATTATAAAAAGTGCATTT
GCTTTAGAATCTGCATTTGGTGGAATTATCGGTTTAGCTATTTCTTGGGGAGTAAAACGTGGAATTTATTCTAATGAAGC
AGGGCAAGGAACTGGGCCACATGCTGCGGCTGCTGCGGAAGTTTCACATCCAGCTAAGCAAGGGTTAGTGCAAGCATTTG
CTGTTTATATTGATACATTATTTGTTTGTTCTGCAACTGCATTTATGATGATCATTACAGGCATGTATAACGTATTTGAT
GCGAGTGGCAAAAATTTTATTGTCAATAAATTAAATGGTGCACAGCCGGGACCTGGTTATACGCAGGCTGCGGTTGAATC
TGTCTTCCCTGGATTTGGAAACGGTTTCGTTGCTATTTCCTTACTATTCTTCGCATTTACAACAGTAATGGCATATTATT
ATATCGCTGAAACGAATATTGCCTACTTAAATCGTAAGAAAGATCGCCCTTGGATGTTGATGTTACTAAAATTTATTTTC
TTAGGAGTTGTATTTTATGGTTGTGTCAAAACGGCAGAGACAGCTTGGGCTTTAGGGGATATTGGTGTAGGGATTATGGC
GTGGGTTAACATTATTGCGATTTTATGTTTGCAAAAGCCAGCCATTCTAGCATTAAAAGATTATGAGAAGCAGAAGAAAG
AAGGGAAAGACCCCGTATTTCATCCGCGAGAACTTGGAATTAAAAATGCAGATTTCTGGGAGCATGAATACGGAAAAGAT
AAGAAAGAAGAAGTATCATAA

Upstream 100 bases:

>100_bases
AAAATATGCTTGCTTTATTAAAATAATATTGTCATGATTTGAGGATGAGTTTATAATTTTTATATATTCTGAATATTCTT
TATAAAAAGGAGGGGGAATT

Downstream 100 bases:

>100_bases
AAGAATAGCAATGAGACAGCAAAGGGAAATCCCTTTGCTTTTTTTGGTTGTTGAAGATCAAATGCAGGAAATCTTGATTT
TTGTTGAATTACTACAATCA

Product: amino acid carrier protein

Products: Na (I) [Cytoplasm]; L-alanine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 486; Mature: 486

Protein sequence:

>486_residues
MEAFVGWLNHIVWSSALVYLCLGAGLYFSIRTRFLQLRHFGEMLKLTFQGEKSEAGVSSFQALALSLSGRVGTGNIAGVA
TAIAFGGPGAIFWMWAVAFLGAGSSYIESTLAQIYKTKHKGQFRGGPAYYIEKGLGLKWYALLFVIATILATGLLLPGVQ
ANSIALSLETAFGVNTSVSGVILVGIVALIIFGGVKRIVNVAQVVVPFMAVGYILVACAIIVMNIEKLPEAFMLIIKSAF
ALESAFGGIIGLAISWGVKRGIYSNEAGQGTGPHAAAAAEVSHPAKQGLVQAFAVYIDTLFVCSATAFMMIITGMYNVFD
ASGKNFIVNKLNGAQPGPGYTQAAVESVFPGFGNGFVAISLLFFAFTTVMAYYYIAETNIAYLNRKKDRPWMLMLLKFIF
LGVVFYGCVKTAETAWALGDIGVGIMAWVNIIAILCLQKPAILALKDYEKQKKEGKDPVFHPRELGIKNADFWEHEYGKD
KKEEVS

Sequences:

>Translated_486_residues
MEAFVGWLNHIVWSSALVYLCLGAGLYFSIRTRFLQLRHFGEMLKLTFQGEKSEAGVSSFQALALSLSGRVGTGNIAGVA
TAIAFGGPGAIFWMWAVAFLGAGSSYIESTLAQIYKTKHKGQFRGGPAYYIEKGLGLKWYALLFVIATILATGLLLPGVQ
ANSIALSLETAFGVNTSVSGVILVGIVALIIFGGVKRIVNVAQVVVPFMAVGYILVACAIIVMNIEKLPEAFMLIIKSAF
ALESAFGGIIGLAISWGVKRGIYSNEAGQGTGPHAAAAAEVSHPAKQGLVQAFAVYIDTLFVCSATAFMMIITGMYNVFD
ASGKNFIVNKLNGAQPGPGYTQAAVESVFPGFGNGFVAISLLFFAFTTVMAYYYIAETNIAYLNRKKDRPWMLMLLKFIF
LGVVFYGCVKTAETAWALGDIGVGIMAWVNIIAILCLQKPAILALKDYEKQKKEGKDPVFHPRELGIKNADFWEHEYGKD
KKEEVS
>Mature_486_residues
MEAFVGWLNHIVWSSALVYLCLGAGLYFSIRTRFLQLRHFGEMLKLTFQGEKSEAGVSSFQALALSLSGRVGTGNIAGVA
TAIAFGGPGAIFWMWAVAFLGAGSSYIESTLAQIYKTKHKGQFRGGPAYYIEKGLGLKWYALLFVIATILATGLLLPGVQ
ANSIALSLETAFGVNTSVSGVILVGIVALIIFGGVKRIVNVAQVVVPFMAVGYILVACAIIVMNIEKLPEAFMLIIKSAF
ALESAFGGIIGLAISWGVKRGIYSNEAGQGTGPHAAAAAEVSHPAKQGLVQAFAVYIDTLFVCSATAFMMIITGMYNVFD
ASGKNFIVNKLNGAQPGPGYTQAAVESVFPGFGNGFVAISLLFFAFTTVMAYYYIAETNIAYLNRKKDRPWMLMLLKFIF
LGVVFYGCVKTAETAWALGDIGVGIMAWVNIIAILCLQKPAILALKDYEKQKKEGKDPVFHPRELGIKNADFWEHEYGKD
KKEEVS

Specific function: Unknown

COG id: COG1115

COG function: function code E; Na+/alanine symporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:alanine (SAF) symporter family [H]

Homologues:

Organism=Escherichia coli, GI1786188, Length=496, Percent_Identity=37.2983870967742, Blast_Score=295, Evalue=6e-81,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001463 [H]

Pfam domain/function: PF01235 Na_Ala_symp [H]

EC number: NA

Molecular weight: Translated: 52420; Mature: 52420

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEAFVGWLNHIVWSSALVYLCLGAGLYFSIRTRFLQLRHFGEMLKLTFQGEKSEAGVSSF
CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHH
QALALSLSGRVGTGNIAGVATAIAFGGPGAIFWMWAVAFLGAGSSYIESTLAQIYKTKHK
HHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
GQFRGGPAYYIEKGLGLKWYALLFVIATILATGLLLPGVQANSIALSLETAFGVNTSVSG
CCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHCCCCCCCHH
VILVGIVALIIFGGVKRIVNVAQVVVPFMAVGYILVACAIIVMNIEKLPEAFMLIIKSAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALESAFGGIIGLAISWGVKRGIYSNEAGQGTGPHAAAAAEVSHPAKQGLVQAFAVYIDTL
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHH
FVCSATAFMMIITGMYNVFDASGKNFIVNKLNGAQPGPGYTQAAVESVFPGFGNGFVAIS
HHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCHHHHHH
LLFFAFTTVMAYYYIAETNIAYLNRKKDRPWMLMLLKFIFLGVVFYGCVKTAETAWALGD
HHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGVGIMAWVNIIAILCLQKPAILALKDYEKQKKEGKDPVFHPRELGIKNADFWEHEYGKD
HHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHCCCC
KKEEVS
CHHCCC
>Mature Secondary Structure
MEAFVGWLNHIVWSSALVYLCLGAGLYFSIRTRFLQLRHFGEMLKLTFQGEKSEAGVSSF
CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHH
QALALSLSGRVGTGNIAGVATAIAFGGPGAIFWMWAVAFLGAGSSYIESTLAQIYKTKHK
HHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
GQFRGGPAYYIEKGLGLKWYALLFVIATILATGLLLPGVQANSIALSLETAFGVNTSVSG
CCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHCCCCCCCHH
VILVGIVALIIFGGVKRIVNVAQVVVPFMAVGYILVACAIIVMNIEKLPEAFMLIIKSAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALESAFGGIIGLAISWGVKRGIYSNEAGQGTGPHAAAAAEVSHPAKQGLVQAFAVYIDTL
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHH
FVCSATAFMMIITGMYNVFDASGKNFIVNKLNGAQPGPGYTQAAVESVFPGFGNGFVAIS
HHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCHHHHHH
LLFFAFTTVMAYYYIAETNIAYLNRKKDRPWMLMLLKFIFLGVVFYGCVKTAETAWALGD
HHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGVGIMAWVNIIAILCLQKPAILALKDYEKQKKEGKDPVFHPRELGIKNADFWEHEYGKD
HHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHCCCC
KKEEVS
CHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Na (I) [Periplasm]; L-alanine [Periplasm] [C]

Specific reaction: Na (I) [Periplasm] + L-alanine [Periplasm] = Na (I) [Cytoplasm] + L-alanine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]