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The map label for this gene is ybfM [H]

Identifier: 152974236

GI number: 152974236

Start: 459670

End: 460266

Strand: Direct

Name: ybfM [H]

Synonym: Bcer98_0402

Alternate gene names: 152974236

Gene position: 459670-460266 (Clockwise)

Preceding gene: 152974234

Following gene: 152974239

Centisome position: 11.25

GC content: 35.18

Gene sequence:

>597_bases
ATGGAACAACATATTGCTGAATTAATCACACAATACGGATATTTTGGGATTATTATCGCTTTAGCTGGTGGAATTGTCGG
GCTGCCGATACCAGATGAATTTCTCTTAACCTTTATTGGGTATAACATTTCAAAGGGTGTTATGTCAGGACCGGCAGCGT
TTTTAAGTGGGATGGCAGGTGCGATGCTTGGAATTACATTAAGTTATTTATTAGGTTTAAAGCTCGGCTTACCTGTATTG
AAAAAATATGGTCCTAAGATTCGAATTAAGGAAAAACAAATTGAAAAAACACATATTTTGTTTGAAAAATATGGTCCATT
TCTTTTACTGGTAGGATACTTTATTCCAGGAGTGCGTCATTTAACAGCGTATTTTGCTGGAGTGTCCAATCTAACTGTAT
GGCGCTTTTGTTTATATGCATATAGTGGTGCGCTTATTTGGATTAGTGTTTTTATCGGACTTGGTTGGAAATTGGGAGAG
AAGTGGCGTTTTGTTGAATATAGCTTACATCATTATGGAATTTGGATATTAATTATTTCAGGACTAATAACAATTGCAGT
TTGCTTTTATTTAAAAAGAAGAAGAAACCGCTCATGA

Upstream 100 bases:

>100_bases
TTATAAAAAACATGTATAGTGAATATGTATACCATGTTTGCTACAAAATGAGAAAGGGCATAATATGGAATAACGATTGT
ACATGGGATGTGTCATCCGA

Downstream 100 bases:

>100_bases
TAAGCGGTTCTTTAGCTAAAAGCGATGAATAAGACACCAGTTGTAATACATATAACACCGATTCCGGTCATGAGATTTAT
TTTTTCACCTAGAATGATCA

Product: SNARE associated Golgi protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MEQHIAELITQYGYFGIIIALAGGIVGLPIPDEFLLTFIGYNISKGVMSGPAAFLSGMAGAMLGITLSYLLGLKLGLPVL
KKYGPKIRIKEKQIEKTHILFEKYGPFLLLVGYFIPGVRHLTAYFAGVSNLTVWRFCLYAYSGALIWISVFIGLGWKLGE
KWRFVEYSLHHYGIWILIISGLITIAVCFYLKRRRNRS

Sequences:

>Translated_198_residues
MEQHIAELITQYGYFGIIIALAGGIVGLPIPDEFLLTFIGYNISKGVMSGPAAFLSGMAGAMLGITLSYLLGLKLGLPVL
KKYGPKIRIKEKQIEKTHILFEKYGPFLLLVGYFIPGVRHLTAYFAGVSNLTVWRFCLYAYSGALIWISVFIGLGWKLGE
KWRFVEYSLHHYGIWILIISGLITIAVCFYLKRRRNRS
>Mature_198_residues
MEQHIAELITQYGYFGIIIALAGGIVGLPIPDEFLLTFIGYNISKGVMSGPAAFLSGMAGAMLGITLSYLLGLKLGLPVL
KKYGPKIRIKEKQIEKTHILFEKYGPFLLLVGYFIPGVRHLTAYFAGVSNLTVWRFCLYAYSGALIWISVFIGLGWKLGE
KWRFVEYSLHHYGIWILIISGLITIAVCFYLKRRRNRS

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1789481, Length=140, Percent_Identity=32.8571428571429, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 22272; Mature: 22272

Theoretical pI: Translated: 10.06; Mature: 10.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQHIAELITQYGYFGIIIALAGGIVGLPIPDEFLLTFIGYNISKGVMSGPAAFLSGMAG
CHHHHHHHHHHHHHHHHHHHHHCCEEECCCCHHHHHHHHHCCHHHHHCCCHHHHHHHHHH
AMLGITLSYLLGLKLGLPVLKKYGPKIRIKEKQIEKTHILFEKYGPFLLLVGYFIPGVRH
HHHHHHHHHHHHHHHCHHHHHHCCCCEEEHHHHHHHHHHHHHHHCHHHHHHHHHHCHHHH
LTAYFAGVSNLTVWRFCLYAYSGALIWISVFIGLGWKLGEKWRFVEYSLHHYGIWILIIS
HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHEEHHHHHHHHHHHHH
GLITIAVCFYLKRRRNRS
HHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MEQHIAELITQYGYFGIIIALAGGIVGLPIPDEFLLTFIGYNISKGVMSGPAAFLSGMAG
CHHHHHHHHHHHHHHHHHHHHHCCEEECCCCHHHHHHHHHCCHHHHHCCCHHHHHHHHHH
AMLGITLSYLLGLKLGLPVLKKYGPKIRIKEKQIEKTHILFEKYGPFLLLVGYFIPGVRH
HHHHHHHHHHHHHHHCHHHHHHCCCCEEEHHHHHHHHHHHHHHHCHHHHHHHHHHCHHHH
LTAYFAGVSNLTVWRFCLYAYSGALIWISVFIGLGWKLGEKWRFVEYSLHHYGIWILIIS
HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHEEHHHHHHHHHHHHH
GLITIAVCFYLKRRRNRS
HHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]