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The map label for this gene is yabO [H]

Identifier: 152973905

GI number: 152973905

Start: 62422

End: 62697

Strand: Direct

Name: yabO [H]

Synonym: Bcer98_0052

Alternate gene names: 152973905

Gene position: 62422-62697 (Clockwise)

Preceding gene: 152973904

Following gene: 152973906

Centisome position: 1.53

GC content: 32.25

Gene sequence:

>276_bases
ATGCGCTTAGATAAATTTTTAAAAGTATCACGTTTAATTAAGAGAAGAACATTGGCAAAAGAAGTGGCAGATCAAGGACG
AATTTCAATTAATGGACAAGTTGCAAAAGCAAGTTCAGTTGTGAAGGTAGAAGATGAACTTACAATTCGATTTGGTCAAA
AAGTAGTAACTGTGAAAATAAATGAGTTAAAAGAAACGACGAAAAAAGAAGATGCTGCTAATATGTATACTGTCATTCGT
GAAGAAAAAGTAAAAGCTGAAGAAGGCTTGTTCTAA

Upstream 100 bases:

>100_bases
TAGCTGAGATGAATAAAGAAATACAACAATTCACATTAGAACAATTAGACGTTTTGTGGGAGGAAGCAAAACAAGTAGAG
AATAAATAGGGGGAAATGAG

Downstream 100 bases:

>100_bases
ATTTATTTCTCCCCTCATACATTACTATTAGCTAATATCAAGCTATGGGGGGATTCTTCGTGAATAATAGTTATTCAACT
ATATCTTCTAACCAGCAAAA

Product: RNA-binding S4 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 91; Mature: 91

Protein sequence:

>91_residues
MRLDKFLKVSRLIKRRTLAKEVADQGRISINGQVAKASSVVKVEDELTIRFGQKVVTVKINELKETTKKEDAANMYTVIR
EEKVKAEEGLF

Sequences:

>Translated_91_residues
MRLDKFLKVSRLIKRRTLAKEVADQGRISINGQVAKASSVVKVEDELTIRFGQKVVTVKINELKETTKKEDAANMYTVIR
EEKVKAEEGLF
>Mature_91_residues
MRLDKFLKVSRLIKRRTLAKEVADQGRISINGQVAKASSVVKVEDELTIRFGQKVVTVKINELKETTKKEDAANMYTVIR
EEKVKAEEGLF

Specific function: Involved In The Recycling Of Free 50s Ribosomal Subunits That Still Carry A Nascent Chain. Binds RNA More Specifically Than DNA. Binds With Very High Affinity To The Free 50s Ribosomal Subunit. Does Not Bind It When It Is Part Of The 70s Ribosome. [C]

COG id: COG1188

COG function: function code J; Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 10365; Mature: 10365

Theoretical pI: Translated: 10.48; Mature: 10.48

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLDKFLKVSRLIKRRTLAKEVADQGRISINGQVAKASSVVKVEDELTIRFGQKVVTVKI
CCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCEEECCCCEEEECCCEEEEECCEEEEEEH
NELKETTKKEDAANMYTVIREEKVKAEEGLF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MRLDKFLKVSRLIKRRTLAKEVADQGRISINGQVAKASSVVKVEDELTIRFGQKVVTVKI
CCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCEEECCCCEEEECCCEEEEECCEEEEEEH
NELKETTKKEDAANMYTVIREEKVKAEEGLF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]