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The map label for this gene is yabD [H]

Identifier: 152973887

GI number: 152973887

Start: 43857

End: 44624

Strand: Direct

Name: yabD [H]

Synonym: Bcer98_0034

Alternate gene names: 152973887

Gene position: 43857-44624 (Clockwise)

Preceding gene: 152973886

Following gene: 152973888

Centisome position: 1.07

GC content: 36.72

Gene sequence:

>768_bases
ATGTTGTTTGATACGCATTCACATTTAAACGCAGAGCAATTTGAGGAAGACTTACAGGAAGTTATTGCTAGGATGAAAGA
GACTGGGGTAGCGTATACAGTTGTTGTTGGTTTTGATGAAGTAACGATAAAGAAGGCAATTGAACTTGCAGAAACATATG
ACTTTATTTATGCAGCAGTTGGTTGGCATCCTGTTGATGCAATTGATATGAAGGAAGAGCATATCGTTTGGTTAGAAGAG
TTAGCTGCTCATCCGAAAGTAGTTGCCCTTGGTGAAATGGGGCTAGATTATCATTGGGACAAGTCTCCGAAAGAAGTGCA
AAAAGAAGTATTCCGCAAACAGATTCAATTAGCTAAGAAAGTAAAATTACCAATTATTATTCATAATCGTGAAGCGACAC
AAGACATTGTCGATATTTTACAAGAGGAGAATGCAGCTGAAGTAGGAGGCATTATGCATTGTTTTAGTGGAAGTGTAGAA
GTAGCAAAGCAATGCATTGATATGAATTTCCTCATTTCATTAGGAGGGCCAGTAACATTCAAAAATGCAAAAAAACCGAA
GGAAGTAGCTACGGAAATTCCAATGGAAAAATTATTAATAGAAACAGATTGTCCATATTTAACACCACATCCGTTCCGTG
GAAAGCGAAATGAACCAAGCTATGTTAAGCTTGTAGCAGAAGAAATTGCAAATCTAAAAGGTATTTCATATGATGAAGTT
GCAAAAATAACAACGGAGAATGCAAAGGCTTTGTTTGGTGTGAAATAA

Upstream 100 bases:

>100_bases
AAGGATTTCACTTTTGACTTATATTGTAATATTACCGGCATTCTATCGTTAGAAAGTGTTTTTTAGTAGCATTTATTTTA
AATAAAAGGAGTTATTTGAC

Downstream 100 bases:

>100_bases
AAAAAGAATGGGGGTGCCCTAAAATGTCCTTTACAAAGGGTACAGATTACCCATTCTTTTCCTTTTTTTAATTGTGTGAA
TGTGAAAATAATAATGGAAA

Product: TatD family hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MLFDTHSHLNAEQFEEDLQEVIARMKETGVAYTVVVGFDEVTIKKAIELAETYDFIYAAVGWHPVDAIDMKEEHIVWLEE
LAAHPKVVALGEMGLDYHWDKSPKEVQKEVFRKQIQLAKKVKLPIIIHNREATQDIVDILQEENAAEVGGIMHCFSGSVE
VAKQCIDMNFLISLGGPVTFKNAKKPKEVATEIPMEKLLIETDCPYLTPHPFRGKRNEPSYVKLVAEEIANLKGISYDEV
AKITTENAKALFGVK

Sequences:

>Translated_255_residues
MLFDTHSHLNAEQFEEDLQEVIARMKETGVAYTVVVGFDEVTIKKAIELAETYDFIYAAVGWHPVDAIDMKEEHIVWLEE
LAAHPKVVALGEMGLDYHWDKSPKEVQKEVFRKQIQLAKKVKLPIIIHNREATQDIVDILQEENAAEVGGIMHCFSGSVE
VAKQCIDMNFLISLGGPVTFKNAKKPKEVATEIPMEKLLIETDCPYLTPHPFRGKRNEPSYVKLVAEEIANLKGISYDEV
AKITTENAKALFGVK
>Mature_255_residues
MLFDTHSHLNAEQFEEDLQEVIARMKETGVAYTVVVGFDEVTIKKAIELAETYDFIYAAVGWHPVDAIDMKEEHIVWLEE
LAAHPKVVALGEMGLDYHWDKSPKEVQKEVFRKQIQLAKKVKLPIIIHNREATQDIVDILQEENAAEVGGIMHCFSGSVE
VAKQCIDMNFLISLGGPVTFKNAKKPKEVATEIPMEKLLIETDCPYLTPHPFRGKRNEPSYVKLVAEEIANLKGISYDEV
AKITTENAKALFGVK

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=264, Percent_Identity=33.3333333333333, Blast_Score=141, Evalue=6e-34,
Organism=Homo sapiens, GI110349734, Length=264, Percent_Identity=33.3333333333333, Blast_Score=139, Evalue=3e-33,
Organism=Homo sapiens, GI226061853, Length=270, Percent_Identity=32.962962962963, Blast_Score=138, Evalue=5e-33,
Organism=Homo sapiens, GI226061614, Length=253, Percent_Identity=32.8063241106719, Blast_Score=133, Evalue=2e-31,
Organism=Homo sapiens, GI14042943, Length=270, Percent_Identity=30.7407407407407, Blast_Score=119, Evalue=2e-27,
Organism=Homo sapiens, GI226061595, Length=227, Percent_Identity=30.3964757709251, Blast_Score=108, Evalue=6e-24,
Organism=Homo sapiens, GI225903424, Length=160, Percent_Identity=35, Blast_Score=103, Evalue=1e-22,
Organism=Homo sapiens, GI225903439, Length=248, Percent_Identity=29.8387096774194, Blast_Score=103, Evalue=2e-22,
Organism=Escherichia coli, GI1787342, Length=257, Percent_Identity=37.3540856031128, Blast_Score=187, Evalue=6e-49,
Organism=Escherichia coli, GI48994985, Length=262, Percent_Identity=33.206106870229, Blast_Score=145, Evalue=4e-36,
Organism=Escherichia coli, GI87082439, Length=259, Percent_Identity=32.8185328185328, Blast_Score=140, Evalue=1e-34,
Organism=Caenorhabditis elegans, GI17559024, Length=278, Percent_Identity=36.3309352517986, Blast_Score=167, Evalue=6e-42,
Organism=Caenorhabditis elegans, GI71980746, Length=261, Percent_Identity=29.1187739463602, Blast_Score=116, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI17565396, Length=224, Percent_Identity=35.7142857142857, Blast_Score=97, Evalue=9e-21,
Organism=Caenorhabditis elegans, GI17543026, Length=183, Percent_Identity=33.879781420765, Blast_Score=91, Evalue=5e-19,
Organism=Drosophila melanogaster, GI24648690, Length=286, Percent_Identity=32.8671328671329, Blast_Score=136, Evalue=1e-32,
Organism=Drosophila melanogaster, GI24586117, Length=285, Percent_Identity=27.719298245614, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI221330018, Length=285, Percent_Identity=27.719298245614, Blast_Score=100, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 28748; Mature: 28748

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: PS01137 TATD_1 ; PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFDTHSHLNAEQFEEDLQEVIARMKETGVAYTVVVGFDEVTIKKAIELAETYDFIYAAV
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHC
GWHPVDAIDMKEEHIVWLEELAAHPKVVALGEMGLDYHWDKSPKEVQKEVFRKQIQLAKK
CCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
VKLPIIIHNREATQDIVDILQEENAAEVGGIMHCFSGSVEVAKQCIDMNFLISLGGPVTF
CCCCEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHCHHEEEECCCCEEE
KNAKKPKEVATEIPMEKLLIETDCPYLTPHPFRGKRNEPSYVKLVAEEIANLKGISYDEV
CCCCCHHHHHHHCCHHHHEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHH
AKITTENAKALFGVK
HHHHCCCCCEEECCC
>Mature Secondary Structure
MLFDTHSHLNAEQFEEDLQEVIARMKETGVAYTVVVGFDEVTIKKAIELAETYDFIYAAV
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHC
GWHPVDAIDMKEEHIVWLEELAAHPKVVALGEMGLDYHWDKSPKEVQKEVFRKQIQLAKK
CCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
VKLPIIIHNREATQDIVDILQEENAAEVGGIMHCFSGSVEVAKQCIDMNFLISLGGPVTF
CCCCEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHCHHEEEECCCCEEE
KNAKKPKEVATEIPMEKLLIETDCPYLTPHPFRGKRNEPSYVKLVAEEIANLKGISYDEV
CCCCCHHHHHHHCCHHHHEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHH
AKITTENAKALFGVK
HHHHCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]