Click here to switch to the map view.

The map label for this gene is recR [H]

Identifier: 152973873

GI number: 152973873

Start: 27703

End: 28299

Strand: Direct

Name: recR [H]

Synonym: Bcer98_0020

Alternate gene names: 152973873

Gene position: 27703-28299 (Clockwise)

Preceding gene: 152973872

Following gene: 152973874

Centisome position: 0.68

GC content: 39.2

Gene sequence:

>597_bases
ATGCATTATCCAGAGCCGATATCAAAGCTTATTGATAGCTTTATGAAACTGCCAGGAATTGGACCAAAGACAGCCGTTCG
TTTGGCATTCTTCGTGCTAGACATGAAGGAAGATGATGTATTAGATTTTGCGAAATCACTTGTGAATGCAAAGAGAAATT
TAACATATTGTTCTGTTTGTGGTCACATTACGGACCGTGATCCTTGTTATATTTGCGATGACTCTCATCGTGATCAATCG
GTTGTTTGTGTTGTGCAGGAACCAAAGGATGTCATCGCAATGGAAAAAATGAAAGAATATCAAGGGGTGTATCATGTGTT
GCGTGGTGCGATTTCTCCGATGGAAGGAATTGGACCTGAGGACATTAATATTCCGCAACTTTTAAAGAGATTACAGGATG
AAACAGTACAAGAAGTTATTTTAGCGACAAACCCAAATATTGAAGGAGAAGCTACAGCAATGTATATTTCTCGTCTTTTA
AAACCAACTGGTATAAAAGTAACACGTATTGCTCATGGCCTCCCGGTAGGTGGAGATTTAGAGTATGCAGATGAAGTGAC
TTTATCTAAGGCTCTTGAAGGTCGTAGAGAAGTATAA

Upstream 100 bases:

>100_bases
CACTAAAAAAAGCGGAAGAACTTTCTAATGCTACAATGGGCCAATTTACAAAAGGGTTGAACTTACCAGGTGGATTGTTC
TAGTAGGAGGATATTGACAT

Downstream 100 bases:

>100_bases
AAGGAGAACCAGAAATGTTTTTTCAAAAAAAGGGGAAATTGCGTAAAGAATATGATGATAAATTAATTGTACTGTTAGAA
AAAGTGAAGAATGAATGGTT

Product: recombination protein RecR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MHYPEPISKLIDSFMKLPGIGPKTAVRLAFFVLDMKEDDVLDFAKSLVNAKRNLTYCSVCGHITDRDPCYICDDSHRDQS
VVCVVQEPKDVIAMEKMKEYQGVYHVLRGAISPMEGIGPEDINIPQLLKRLQDETVQEVILATNPNIEGEATAMYISRLL
KPTGIKVTRIAHGLPVGGDLEYADEVTLSKALEGRREV

Sequences:

>Translated_198_residues
MHYPEPISKLIDSFMKLPGIGPKTAVRLAFFVLDMKEDDVLDFAKSLVNAKRNLTYCSVCGHITDRDPCYICDDSHRDQS
VVCVVQEPKDVIAMEKMKEYQGVYHVLRGAISPMEGIGPEDINIPQLLKRLQDETVQEVILATNPNIEGEATAMYISRLL
KPTGIKVTRIAHGLPVGGDLEYADEVTLSKALEGRREV
>Mature_198_residues
MHYPEPISKLIDSFMKLPGIGPKTAVRLAFFVLDMKEDDVLDFAKSLVNAKRNLTYCSVCGHITDRDPCYICDDSHRDQS
VVCVVQEPKDVIAMEKMKEYQGVYHVLRGAISPMEGIGPEDINIPQLLKRLQDETVQEVILATNPNIEGEATAMYISRLL
KPTGIKVTRIAHGLPVGGDLEYADEVTLSKALEGRREV

Specific function: May play a role in DNA repair. It seems to be involved in an recBC-independent recombinational process of DNA repair. It may act with recF and recO [H]

COG id: COG0353

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Toprim domain [H]

Homologues:

Organism=Escherichia coli, GI1786678, Length=193, Percent_Identity=41.9689119170984, Blast_Score=174, Evalue=3e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003583
- InterPro:   IPR000093
- InterPro:   IPR006171
- InterPro:   IPR015967 [H]

Pfam domain/function: PF02132 RecR; PF01751 Toprim [H]

EC number: NA

Molecular weight: Translated: 22072; Mature: 22072

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: PS01300 RECR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHYPEPISKLIDSFMKLPGIGPKTAVRLAFFVLDMKEDDVLDFAKSLVNAKRNLTYCSVC
CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEHH
GHITDRDPCYICDDSHRDQSVVCVVQEPKDVIAMEKMKEYQGVYHVLRGAISPMEGIGPE
CCCCCCCCEEEECCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
DINIPQLLKRLQDETVQEVILATNPNIEGEATAMYISRLLKPTGIKVTRIAHGLPVGGDL
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEHHHCCCCCCCCC
EYADEVTLSKALEGRREV
CHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MHYPEPISKLIDSFMKLPGIGPKTAVRLAFFVLDMKEDDVLDFAKSLVNAKRNLTYCSVC
CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEHH
GHITDRDPCYICDDSHRDQSVVCVVQEPKDVIAMEKMKEYQGVYHVLRGAISPMEGIGPE
CCCCCCCCEEEECCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
DINIPQLLKRLQDETVQEVILATNPNIEGEATAMYISRLLKPTGIKVTRIAHGLPVGGDL
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEHHHCCCCCCCCC
EYADEVTLSKALEGRREV
CHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA