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The map label for this gene is fimD [H]

Identifier: 152971513

GI number: 152971513

Start: 3281060

End: 3283597

Strand: Direct

Name: fimD [H]

Synonym: KPN_02986

Alternate gene names: 152971513

Gene position: 3281060-3283597 (Clockwise)

Preceding gene: 152971512

Following gene: 152971519

Centisome position: 61.73

GC content: 55.59

Gene sequence:

>2538_bases
ATGGACGATAGTAAATTACGCTATTTTGCCAGCGCATGGTTAATCTCCATCACGTTACCGGCAGACAGCGCGGAACGCTA
TAATGCCCAGTTTGTGAACGGCATCGACCCGCTGGCTTTTAATCAGTTTGTCGCCAGCGATGGCGACGTCATGCCGGGCA
CCTATGACGTTAATATTTACATTAACGATCTGCTGGTGGATAGCCGCCCCGTTCGCTTCTCAGAGGATAGCGCACACGGC
GGGTTGGCCCCCTGCCTGAGCGCGGCGGAATATATCCGCTATGGCGTCAAGATTGACGATGACCACCAGCCCTGTTTCGC
GCTGTCGCAGACGATCCGCCAGGCAGAGCAACAGCTGGATATCGCTAATCATCGGCTGATCATACATATCCCTCAGCAAT
ATATTGAGCACTATCCTCGCGACTATGTTTCCCCCATGCGCTTTGATGAAGGTATTAACGCTGCTTTCGTCAACTACAGC
TATTCTACCGATGCCAATAATGGCGACGGGGGCAGCCACCAGTACCAATATCTTTCGCTAAACAGCGGGATCAATATTGC
ATCGTGGCGATTGCGCAATAATGCCTACTGGAATAAGTTCAGCGGCCAGGCGGATAAGTGGCAAAGCATCGCCAGTTGGG
CGGAAACGAACATCATTCCCTGGCGCAGCCGGCTTGTCGTCGGCCAGACCAGTACCGACAACAGCGTCTTCGATAGCGTC
CAGTTTCGCGGCGTACAGCTTGGCACCGATGTCGAAATGCGCCCCAGCAGCCAGACCGGCTTCGCGCCGGTCATTCGCGG
TGTGGCCAACAGCAATGCCCGGGTGGAAGTTCGGCAGAACAACTATCTGATTTACAGCGAGAACGTCCCAGCCGGTCCCT
TTGAGCTAAATGATATCAGCGCCGTTAACCGCAGCGGTGATTTCTACGTAACCGTCATTGAAGCCGACGGTAGCCAGACG
ACCTTTACTGTCGCCTACACCACCCTGCCACAGCTGGTGCGGGCAGGCCAATGGAATTATCAGCTGTCGGCGGGTAAGTA
TCATGACGGTGCTGACGGCTATGCCCCCGCCCTGATGCAAAGCTCGCTCTCTTATGGCCTGAATAATACCTTCACACTAT
ACGGTGGCGCCCTTGCCGCGGAGAACTATCGCGCCGGCGCCTTTGGCGTCGGTAGCAATCTGGGGGAGATTGGCGCCCTC
TCAGCCGACTATACGCTGGCGGGAACGACGCTGGCGAATGGCCAGCGCAAGCAGGGAGGGAGCGTGCGTTTTCTGTATGC
TAAATCCTTTTTATCAAGCAAGACCGACTTTCAAATCGCGGGCTACCGTTACTCAACGGCAGGTTATTATAGCCTCAGCG
ATGCGGTTAACGAGCGTCGACGCTGGCACAATGGCCTGTACGAAAATGATTACTGGCCCTCTGACGAAGACGAAAGCTGG
CAGGCAAGCGCTCCCCAACACTATTACACGTCCTGGTTTTATAATAAAAAGCATCGCTTTGATATTTCTGCCCGGCAAAC
TCTCGGTAAGAACAGCGCTTTCTTCCTTAACTTCAGCCAGCAAAATTACTGGAATAGCTCAGGAAGCGATATCTCGCTGC
AGGCGGGCTTTAACAGCACTATCCATAACGTGAACTATGGTCTGTACTATCAGAATACGCGCAGCCACTTCACCCATGAC
GACAATAGCATCACACTGCGCGTTTCCATCCCTTTTACTCTGCAAGAAAACCGCCGGATCAATACCGCATTTACCCTCGC
CCACAGTAAATCGTCTGGCACGTCCGGGCAGGCTGGGGTAAACGGCACGCTGCTCGATGATGGTCGCCTGAGCTGGGCCG
TCACCAGCGCCTATGATGACACCAGCCATAGCACCAACAGCGCCAGCCTGGGTTATCTCGGCCAGTACGGTAATCTGTAT
ACCGGTTACGCCTACAGCAAAAGCCATCGTCAGGCGAGTCTGAATCTGAGCGGCGGCGTGGTGGCGCACCGCGGCGGCGT
TACCCTCTCGCAACCGCTGGGCTCAACCTTTGCGCTAGTGGAGGCCAAAGACGCTCAGGGGGTAGGGATAGAGAATCAGA
CCGGCGTGCGCATCGATCCCTTCGGCTACGCTGTCGTACCACAAAGCGTTCCCTATCGGGTCAATTCTGTCGCGCTCAAC
CCTCAGGACTTCGATACCTTTCTTGATGTCCCTAACGCGGTAGCGGATACCGTGCCTACCCGCGGGGCAATCACCCGGGT
GCGCTTTGATACGTTCCGGGGATATAGCGTGCTGATCCATACCACCCTCGCCGACGGCAGCTATCCACCATTGGGCGCAC
AGCTCTATCGCGCCAGTGGGATCAGCAATGGTCTGGTCGGCCCGGGAGGAGAAGTTTACGTCAGCGGAGTCGATTCAGGC
GAAAAGCTGCAGATGAAATGGGGCGAAACGCACCAGCAAAGCTGCGAAATCACCCTGCCCGAACTGCGCCAGGAGCCTCA
GCAGGCGACGGCCTGGCGTGAATTATCCTTAATCTGCACAGTAACCCCCTCGAGGTAA

Upstream 100 bases:

>100_bases
TGCAGCGCTTGCATAAAATGAAATATATTAATGATTACGGCGCCGTTGTTGATATTCCAATAAAAAAATAAACGTCGCAC
CTCTTTAGGGAGATAGAGTG

Downstream 100 bases:

>100_bases
TTATGCGCCGACTTAGCGATACGTTATTTCTGACATGGCTTTCCGTTCTGTTCATGCTGAGCGCCTTCCCGGCGCAGGCG
CTGACCTGCAAGACCACCTC

Product: outer membrane protein; export and assembly of type 1 fimbriae

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 845; Mature: 845

Protein sequence:

>845_residues
MDDSKLRYFASAWLISITLPADSAERYNAQFVNGIDPLAFNQFVASDGDVMPGTYDVNIYINDLLVDSRPVRFSEDSAHG
GLAPCLSAAEYIRYGVKIDDDHQPCFALSQTIRQAEQQLDIANHRLIIHIPQQYIEHYPRDYVSPMRFDEGINAAFVNYS
YSTDANNGDGGSHQYQYLSLNSGINIASWRLRNNAYWNKFSGQADKWQSIASWAETNIIPWRSRLVVGQTSTDNSVFDSV
QFRGVQLGTDVEMRPSSQTGFAPVIRGVANSNARVEVRQNNYLIYSENVPAGPFELNDISAVNRSGDFYVTVIEADGSQT
TFTVAYTTLPQLVRAGQWNYQLSAGKYHDGADGYAPALMQSSLSYGLNNTFTLYGGALAAENYRAGAFGVGSNLGEIGAL
SADYTLAGTTLANGQRKQGGSVRFLYAKSFLSSKTDFQIAGYRYSTAGYYSLSDAVNERRRWHNGLYENDYWPSDEDESW
QASAPQHYYTSWFYNKKHRFDISARQTLGKNSAFFLNFSQQNYWNSSGSDISLQAGFNSTIHNVNYGLYYQNTRSHFTHD
DNSITLRVSIPFTLQENRRINTAFTLAHSKSSGTSGQAGVNGTLLDDGRLSWAVTSAYDDTSHSTNSASLGYLGQYGNLY
TGYAYSKSHRQASLNLSGGVVAHRGGVTLSQPLGSTFALVEAKDAQGVGIENQTGVRIDPFGYAVVPQSVPYRVNSVALN
PQDFDTFLDVPNAVADTVPTRGAITRVRFDTFRGYSVLIHTTLADGSYPPLGAQLYRASGISNGLVGPGGEVYVSGVDSG
EKLQMKWGETHQQSCEITLPELRQEPQQATAWRELSLICTVTPSR

Sequences:

>Translated_845_residues
MDDSKLRYFASAWLISITLPADSAERYNAQFVNGIDPLAFNQFVASDGDVMPGTYDVNIYINDLLVDSRPVRFSEDSAHG
GLAPCLSAAEYIRYGVKIDDDHQPCFALSQTIRQAEQQLDIANHRLIIHIPQQYIEHYPRDYVSPMRFDEGINAAFVNYS
YSTDANNGDGGSHQYQYLSLNSGINIASWRLRNNAYWNKFSGQADKWQSIASWAETNIIPWRSRLVVGQTSTDNSVFDSV
QFRGVQLGTDVEMRPSSQTGFAPVIRGVANSNARVEVRQNNYLIYSENVPAGPFELNDISAVNRSGDFYVTVIEADGSQT
TFTVAYTTLPQLVRAGQWNYQLSAGKYHDGADGYAPALMQSSLSYGLNNTFTLYGGALAAENYRAGAFGVGSNLGEIGAL
SADYTLAGTTLANGQRKQGGSVRFLYAKSFLSSKTDFQIAGYRYSTAGYYSLSDAVNERRRWHNGLYENDYWPSDEDESW
QASAPQHYYTSWFYNKKHRFDISARQTLGKNSAFFLNFSQQNYWNSSGSDISLQAGFNSTIHNVNYGLYYQNTRSHFTHD
DNSITLRVSIPFTLQENRRINTAFTLAHSKSSGTSGQAGVNGTLLDDGRLSWAVTSAYDDTSHSTNSASLGYLGQYGNLY
TGYAYSKSHRQASLNLSGGVVAHRGGVTLSQPLGSTFALVEAKDAQGVGIENQTGVRIDPFGYAVVPQSVPYRVNSVALN
PQDFDTFLDVPNAVADTVPTRGAITRVRFDTFRGYSVLIHTTLADGSYPPLGAQLYRASGISNGLVGPGGEVYVSGVDSG
EKLQMKWGETHQQSCEITLPELRQEPQQATAWRELSLICTVTPSR
>Mature_845_residues
MDDSKLRYFASAWLISITLPADSAERYNAQFVNGIDPLAFNQFVASDGDVMPGTYDVNIYINDLLVDSRPVRFSEDSAHG
GLAPCLSAAEYIRYGVKIDDDHQPCFALSQTIRQAEQQLDIANHRLIIHIPQQYIEHYPRDYVSPMRFDEGINAAFVNYS
YSTDANNGDGGSHQYQYLSLNSGINIASWRLRNNAYWNKFSGQADKWQSIASWAETNIIPWRSRLVVGQTSTDNSVFDSV
QFRGVQLGTDVEMRPSSQTGFAPVIRGVANSNARVEVRQNNYLIYSENVPAGPFELNDISAVNRSGDFYVTVIEADGSQT
TFTVAYTTLPQLVRAGQWNYQLSAGKYHDGADGYAPALMQSSLSYGLNNTFTLYGGALAAENYRAGAFGVGSNLGEIGAL
SADYTLAGTTLANGQRKQGGSVRFLYAKSFLSSKTDFQIAGYRYSTAGYYSLSDAVNERRRWHNGLYENDYWPSDEDESW
QASAPQHYYTSWFYNKKHRFDISARQTLGKNSAFFLNFSQQNYWNSSGSDISLQAGFNSTIHNVNYGLYYQNTRSHFTHD
DNSITLRVSIPFTLQENRRINTAFTLAHSKSSGTSGQAGVNGTLLDDGRLSWAVTSAYDDTSHSTNSASLGYLGQYGNLY
TGYAYSKSHRQASLNLSGGVVAHRGGVTLSQPLGSTFALVEAKDAQGVGIENQTGVRIDPFGYAVVPQSVPYRVNSVALN
PQDFDTFLDVPNAVADTVPTRGAITRVRFDTFRGYSVLIHTTLADGSYPPLGAQLYRASGISNGLVGPGGEVYVSGVDSG
EKLQMKWGETHQQSCEITLPELRQEPQQATAWRELSLICTVTPSR

Specific function: Involved in the export and assembly of fimA fimbrial subunits across the outer membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1790772, Length=852, Percent_Identity=39.5539906103286, Blast_Score=560, Evalue=1e-160,
Organism=Escherichia coli, GI1787172, Length=854, Percent_Identity=35.3629976580796, Blast_Score=481, Evalue=1e-137,
Organism=Escherichia coli, GI1786744, Length=815, Percent_Identity=35.8282208588957, Blast_Score=464, Evalue=1e-131,
Organism=Escherichia coli, GI1789533, Length=790, Percent_Identity=34.3037974683544, Blast_Score=437, Evalue=1e-123,
Organism=Escherichia coli, GI1786332, Length=859, Percent_Identity=28.4051222351572, Blast_Score=328, Evalue=7e-91,
Organism=Escherichia coli, GI1788427, Length=828, Percent_Identity=27.8985507246377, Blast_Score=315, Evalue=7e-87,
Organism=Escherichia coli, GI87081778, Length=818, Percent_Identity=26.6503667481663, Blast_Score=216, Evalue=4e-57,
Organism=Escherichia coli, GI1789610, Length=816, Percent_Identity=26.7156862745098, Blast_Score=159, Evalue=7e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 93210; Mature: 93210

Theoretical pI: Translated: 5.91; Mature: 5.91

Prosite motif: PS01151 FIMBRIAL_USHER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDSKLRYFASAWLISITLPADSAERYNAQFVNGIDPLAFNQFVASDGDVMPGTYDVNIY
CCCCCEEEEEEEEEEEEECCCCCCHHCCCHHHCCCCCHHHHHHHCCCCCCCCCEEEEEEE
INDLLVDSRPVRFSEDSAHGGLAPCLSAAEYIRYGVKIDDDHQPCFALSQTIRQAEQQLD
EEEEEECCCCCEECCCCCCCCHHHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHH
IANHRLIIHIPQQYIEHYPRDYVSPMRFDEGINAAFVNYSYSTDANNGDGGSHQYQYLSL
HHCCEEEEECCHHHHHHCCHHHCCCHHHCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEE
NSGINIASWRLRNNAYWNKFSGQADKWQSIASWAETNIIPWRSRLVVGQTSTDNSVFDSV
CCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHCC
QFRGVQLGTDVEMRPSSQTGFAPVIRGVANSNARVEVRQNNYLIYSENVPAGPFELNDIS
EEEEEEECCCCEECCCCCCCHHHHHHHHCCCCCEEEEECCCEEEEECCCCCCCEECCCCC
AVNRSGDFYVTVIEADGSQTTFTVAYTTLPQLVRAGQWNYQLSAGKYHDGADGYAPALMQ
EECCCCCEEEEEEECCCCCEEEEEEEHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHH
SSLSYGLNNTFTLYGGALAAENYRAGAFGVGSNLGEIGALSADYTLAGTTLANGQRKQGG
HHHHCCCCCEEEEECCEEEECCCCCCEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCC
SVRFLYAKSFLSSKTDFQIAGYRYSTAGYYSLSDAVNERRRWHNGLYENDYWPSDEDESW
CEEEEEEEHHHCCCCCEEEEEEEECCCCEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
QASAPQHYYTSWFYNKKHRFDISARQTLGKNSAFFLNFSQQNYWNSSGSDISLQAGFNST
CCCCCCCEEEEEEECCCEEEECHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEECCCCCC
IHNVNYGLYYQNTRSHFTHDDNSITLRVSIPFTLQENRRINTAFTLAHSKSSGTSGQAGV
EEECEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEECCCCCCCCCCCC
NGTLLDDGRLSWAVTSAYDDTSHSTNSASLGYLGQYGNLYTGYAYSKSHRQASLNLSGGV
CCEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEECEEECCCCCEEEEECCCCE
VAHRGGVTLSQPLGSTFALVEAKDAQGVGIENQTGVRIDPFGYAVVPQSVPYRVNSVALN
EEECCCEEECCCCCCEEEEEEECCCCCCCCCCCCCCEECCCCEEECCCCCCEEEEEEEEC
PQDFDTFLDVPNAVADTVPTRGAITRVRFDTFRGYSVLIHTTLADGSYPPLGAQLYRASG
CCCHHHHHCCCCHHHHCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCCCCCHHHHHHCC
ISNGLVGPGGEVYVSGVDSGEKLQMKWGETHQQSCEITLPELRQEPQQATAWRELSLICT
CCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCEEECHHHHCCHHHHHHHEEEEEEEE
VTPSR
ECCCC
>Mature Secondary Structure
MDDSKLRYFASAWLISITLPADSAERYNAQFVNGIDPLAFNQFVASDGDVMPGTYDVNIY
CCCCCEEEEEEEEEEEEECCCCCCHHCCCHHHCCCCCHHHHHHHCCCCCCCCCEEEEEEE
INDLLVDSRPVRFSEDSAHGGLAPCLSAAEYIRYGVKIDDDHQPCFALSQTIRQAEQQLD
EEEEEECCCCCEECCCCCCCCHHHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHH
IANHRLIIHIPQQYIEHYPRDYVSPMRFDEGINAAFVNYSYSTDANNGDGGSHQYQYLSL
HHCCEEEEECCHHHHHHCCHHHCCCHHHCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEE
NSGINIASWRLRNNAYWNKFSGQADKWQSIASWAETNIIPWRSRLVVGQTSTDNSVFDSV
CCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHCC
QFRGVQLGTDVEMRPSSQTGFAPVIRGVANSNARVEVRQNNYLIYSENVPAGPFELNDIS
EEEEEEECCCCEECCCCCCCHHHHHHHHCCCCCEEEEECCCEEEEECCCCCCCEECCCCC
AVNRSGDFYVTVIEADGSQTTFTVAYTTLPQLVRAGQWNYQLSAGKYHDGADGYAPALMQ
EECCCCCEEEEEEECCCCCEEEEEEEHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHH
SSLSYGLNNTFTLYGGALAAENYRAGAFGVGSNLGEIGALSADYTLAGTTLANGQRKQGG
HHHHCCCCCEEEEECCEEEECCCCCCEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCC
SVRFLYAKSFLSSKTDFQIAGYRYSTAGYYSLSDAVNERRRWHNGLYENDYWPSDEDESW
CEEEEEEEHHHCCCCCEEEEEEEECCCCEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
QASAPQHYYTSWFYNKKHRFDISARQTLGKNSAFFLNFSQQNYWNSSGSDISLQAGFNST
CCCCCCCEEEEEEECCCEEEECHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEECCCCCC
IHNVNYGLYYQNTRSHFTHDDNSITLRVSIPFTLQENRRINTAFTLAHSKSSGTSGQAGV
EEECEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEECCCCCCCCCCCC
NGTLLDDGRLSWAVTSAYDDTSHSTNSASLGYLGQYGNLYTGYAYSKSHRQASLNLSGGV
CCEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEECEEECCCCCEEEEECCCCE
VAHRGGVTLSQPLGSTFALVEAKDAQGVGIENQTGVRIDPFGYAVVPQSVPYRVNSVALN
EEECCCEEECCCCCCEEEEEEECCCCCCCCCCCCCCEECCCCEEECCCCCCEEEEEEEEC
PQDFDTFLDVPNAVADTVPTRGAITRVRFDTFRGYSVLIHTTLADGSYPPLGAQLYRASG
CCCHHHHHCCCCHHHHCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCCCCCHHHHHHCC
ISNGLVGPGGEVYVSGVDSGEKLQMKWGETHQQSCEITLPELRQEPQQATAWRELSLICT
CCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCEEECHHHHCCHHHHHHHEEEEEEEE
VTPSR
ECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1970114; 7610040; 9278503 [H]