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The map label for this gene is ypdB [H]

Identifier: 152971274

GI number: 152971274

Start: 3008728

End: 3009480

Strand: Direct

Name: ypdB [H]

Synonym: KPN_02737

Alternate gene names: 152971274

Gene position: 3008728-3009480 (Clockwise)

Preceding gene: 152971273

Following gene: 152971276

Centisome position: 56.61

GC content: 50.07

Gene sequence:

>753_bases
ATGAGCGGAGAAAAGATGAAAGTTATCATTGTGGAGGATGAGTTTCTGGCCCAGCAGGAGCTCTCCTGGCTTATTAACAC
CCATAGCCAGATGGAGATCGTCGGCAGCTTTGACGACGGCCTGGACGTGCTGAAATTTCTCCAGCACAACAAGGTCGACG
CCATCTTTCTCGATATCAATATTCCGTCGCTCGACGGGGTTCTGCTGGCGCAAAACATCAGCCAGTTTGCCCATAAACCT
TTTATCGTCTTTATCACCGCGTGGAAAGAACATGCGGTGGAAGCCTTTGAGCTGGAAGCCTTTGACTACATCCTGAAACC
CTACCAGGAATCGCGCATCATCAATATGCTGCAAAAGCTGACCACCGCCTGGCAGCAGCAAAATAACGCTGCTTCAGGAT
TAGCCAGCGCGGCGCCACGGGAAAACGACACCATCAATCTGATCAAAGATGAGCGGATTATCGTCACCAGTATTCATGAT
ATTTATTATGCCGAGGCGCATGAAAAGATGACATTCGTCTATACCCGCCGGGAGTCATTCGTCATGCCGATGAACATTAC
TGAATTCTGCAGCAAACTGCCCACCGCGCATTTCTTCCGCTGCCACCGCTCGTATTGCGTAAATCTCAGCAAAATTCGGG
AAATTGAGCCGTGGTTCAACAACACCTATGTGCTGCGCCTGCGTGACCTGGAGTTTCAGGTTCCGGTCAGTCGCAGTAAA
GTGAAAGAGTTTCGCCAGCTGATGAATCTGTAG

Upstream 100 bases:

>100_bases
GCGAGGGTTTGCATATCCGCAATCTGACGCCGGGAACCGAAATTGCCTTTTATGTCCCCAATAACTCTACGCCGCAGGCG
CTGACGGAGTCGCTGTTGTC

Downstream 100 bases:

>100_bases
AGAGCGGAAAGCGCCGCCATCCGGGCTACGACGGTAGCCCGGGAGAAGAATGCTTAAAGCACCTGGCCCAGCGTCTGACG
CAGATGCGCGCCGGAGCCCA

Product: putative 2-component transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 249

Protein sequence:

>250_residues
MSGEKMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHNKVDAIFLDINIPSLDGVLLAQNISQFAHKP
FIVFITAWKEHAVEAFELEAFDYILKPYQESRIINMLQKLTTAWQQQNNAASGLASAAPRENDTINLIKDERIIVTSIHD
IYYAEAHEKMTFVYTRRESFVMPMNITEFCSKLPTAHFFRCHRSYCVNLSKIREIEPWFNNTYVLRLRDLEFQVPVSRSK
VKEFRQLMNL

Sequences:

>Translated_250_residues
MSGEKMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHNKVDAIFLDINIPSLDGVLLAQNISQFAHKP
FIVFITAWKEHAVEAFELEAFDYILKPYQESRIINMLQKLTTAWQQQNNAASGLASAAPRENDTINLIKDERIIVTSIHD
IYYAEAHEKMTFVYTRRESFVMPMNITEFCSKLPTAHFFRCHRSYCVNLSKIREIEPWFNNTYVLRLRDLEFQVPVSRSK
VKEFRQLMNL
>Mature_249_residues
SGEKMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHNKVDAIFLDINIPSLDGVLLAQNISQFAHKPF
IVFITAWKEHAVEAFELEAFDYILKPYQESRIINMLQKLTTAWQQQNNAASGLASAAPRENDTINLIKDERIIVTSIHDI
YYAEAHEKMTFVYTRRESFVMPMNITEFCSKLPTAHFFRCHRSYCVNLSKIREIEPWFNNTYVLRLRDLEFQVPVSRSKV
KEFRQLMNL

Specific function: Unknown

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788724, Length=245, Percent_Identity=86.9387755102041, Blast_Score=449, Evalue=1e-128,
Organism=Escherichia coli, GI87082052, Length=252, Percent_Identity=31.3492063492063, Blast_Score=120, Evalue=8e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 29213; Mature: 29082

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGEKMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHNKVDAIFLDIN
CCCCEEEEEEECCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEEEEEE
IPSLDGVLLAQNISQFAHKPFIVFITAWKEHAVEAFELEAFDYILKPYQESRIINMLQKL
CCCCCCHHHHHHHHHHHCCCEEEEEEECHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHH
TTAWQQQNNAASGLASAAPRENDTINLIKDERIIVTSIHDIYYAEAHEKMTFVYTRRESF
HHHHHHCCCHHHHHHHCCCCCCCEEEEEECCEEEEEEHHHHHHHHHCCCEEEEEEECCCE
VMPMNITEFCSKLPTAHFFRCHRSYCVNLSKIREIEPWFNNTYVLRLRDLEFQVPVSRSK
EECCCHHHHHHHCCHHHHHHHHHHHHCCHHHHHHCCCCCCCEEEEEEECCEEECCCCHHH
VKEFRQLMNL
HHHHHHHHCC
>Mature Secondary Structure 
SGEKMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHNKVDAIFLDIN
CCCEEEEEEECCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEEEEEE
IPSLDGVLLAQNISQFAHKPFIVFITAWKEHAVEAFELEAFDYILKPYQESRIINMLQKL
CCCCCCHHHHHHHHHHHCCCEEEEEEECHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHH
TTAWQQQNNAASGLASAAPRENDTINLIKDERIIVTSIHDIYYAEAHEKMTFVYTRRESF
HHHHHHCCCHHHHHHHCCCCCCCEEEEEECCEEEEEEHHHHHHHHHCCCEEEEEEECCCE
VMPMNITEFCSKLPTAHFFRCHRSYCVNLSKIREIEPWFNNTYVLRLRDLEFQVPVSRSK
EECCCHHHHHHHCCHHHHHHHHHHHHCCHHHHHHCCCCCCCEEEEEEECCEEECCCCHHH
VKEFRQLMNL
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]