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The map label for this gene is ypdA [H]

Identifier: 152971273

GI number: 152971273

Start: 3007034

End: 3008731

Strand: Direct

Name: ypdA [H]

Synonym: KPN_02736

Alternate gene names: 152971273

Gene position: 3007034-3008731 (Clockwise)

Preceding gene: 152971271

Following gene: 152971274

Centisome position: 56.58

GC content: 55.42

Gene sequence:

>1698_bases
ATGCACGAAATCTTTACTATGATGCTGGCGGTCTATGATCGTGCGGCCCTGATGCTTATTTGCCTCTTTTTCCTTATTCG
CCTGCGCCTGTTCCGCGAACTGTTGCATAAGTCGGCCCATACTCCGAAAGAGCTGCTGGCGGTGACAGCCATTTTCTCGC
TGTTCGCGCTATTTAGTACCTGGTCCGGCGTCCCGGTTGAGGGGTCCCTGGTGAACGTGCGCATTATCGCCGTGATGTCC
GGTGGGATCCTGTTTGGTCCCTGGGTGGGCGCGATTGTCGGGGCGATTGCCGGCGTGCACCGCTATTTGATTGATATCGA
CGGCGTGACCGCGGTGCCCTGCTTTATCACCAGCATTGTCGCCGGCCTGCTGTCGGGGTTGATTAATCGTAAAGTGGCCC
GCGAACAACGGTGGAAAATCGGCATTCTGGCGGGGATGATGTGTGAAACTCTGACCATGATCCTGGTGGTGGTCTGGGCG
CCTTCCCTGAGTCTCGGCGTAGATATTGTTTCGAAAATTGGTATCCCGATGATCCTCGGCAGCGTCTGCATCGGCTTTAT
CGTGCTGCTGGTGCAGAGCGTTGAAGGGGAAAAGGAGGCCAGCGCGGCGCGGCAGGCGAAACTGGCGCTCGATATCGCCA
ACAAAACCCTGCCGCTGTTTCGACACGTTAACAGCGATTCTCTGCGCCAGGTTTGCGAGATTATCCGCCGCGACATTACC
GCCGACGCGGTGGCGATCACCAATACCGAGCACGTGCTGGCCTACGTGGGCGTCGGTGAAGCCAACTATCAACGCCACGA
CGATATGATTAGCCCCACCACCCGGCAGGCGATTCGTTATGGGAAAATCATCATAAAAAACAATGACGAAGCCCACCGCA
CCCCGGAGATCCACTCCTTGATGGTGATCCCGCTGTGGGAAAAAGGGGTGGTGACCGGCACGCTAAAAATCTATTACTGC
CACGCCCATCGCATCACTTCGACGCTGCAGGAGATGGCGATTGGCCTGTCGCAAATAATCTCCACCCAGCTGGAAGTCTC
CCGCGCCGAACAGCTGCGGGAGATGGCCAACAAAGCGGAGCTGCGCGCCCTGCAAAGCAAAATTAACCCGCATTTTTTAT
TTAATGCGCTGAACGCGATCTCCTCCTCGATTCGCCTTAATCCGGACACCGCGCGCCAGCTCATTTTTAATCTGTCGCGC
TACCTGCGCTATAACATCGAATTAAAAGACGATGAGCAGATTGATATCAAACGAGAGCTGTATCAGATCAAAGATTATAT
CGCTATTGAACAGGCGCGATTCGGCGACAAGCTGACGGTCATCTACGATATTGACGACGACGTCAGCTGCGTGATCCCGA
GCCTGCTTATCCAGCCGCTGGTGGAAAATGCCATCGTTCACGGTATTCAACCCTGTAAAGGCAAAGGCGTGGTGACGATC
GGCATTAACGAGTGCGGCAATCGGGTACGCATCAGCGTTCGCGATACGGGCAACGGTATCGATCCCGCCGTGGTCGCCCG
CGTGGAAGCCGATGAGATGCCGGGTAACAAAATCGGCCTGCTCAATGTGCATCATCGGGTGAAACTTCTCTACGGCGAGG
GTTTGCATATCCGCAATCTGACGCCGGGAACCGAAATTGCCTTTTATGTCCCCAATAACTCTACGCCGCAGGCGCTGACG
GAGTCGCTGTTGTCATGA

Upstream 100 bases:

>100_bases
CTTTAAAAAGTGCGACTTTTCCGCTTTATGGTTCCACGGCTGGTCTTCTGCCGTCAGGTTTTTTATCATGTCCCTTTCTG
GCCACTGACGCGGCGCACCC

Downstream 100 bases:

>100_bases
GCGGAGAAAAGATGAAAGTTATCATTGTGGAGGATGAGTTTCTGGCCCAGCAGGAGCTCTCCTGGCTTATTAACACCCAT
AGCCAGATGGAGATCGTCGG

Product: putative sensor protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 565; Mature: 565

Protein sequence:

>565_residues
MHEIFTMMLAVYDRAALMLICLFFLIRLRLFRELLHKSAHTPKELLAVTAIFSLFALFSTWSGVPVEGSLVNVRIIAVMS
GGILFGPWVGAIVGAIAGVHRYLIDIDGVTAVPCFITSIVAGLLSGLINRKVAREQRWKIGILAGMMCETLTMILVVVWA
PSLSLGVDIVSKIGIPMILGSVCIGFIVLLVQSVEGEKEASAARQAKLALDIANKTLPLFRHVNSDSLRQVCEIIRRDIT
ADAVAITNTEHVLAYVGVGEANYQRHDDMISPTTRQAIRYGKIIIKNNDEAHRTPEIHSLMVIPLWEKGVVTGTLKIYYC
HAHRITSTLQEMAIGLSQIISTQLEVSRAEQLREMANKAELRALQSKINPHFLFNALNAISSSIRLNPDTARQLIFNLSR
YLRYNIELKDDEQIDIKRELYQIKDYIAIEQARFGDKLTVIYDIDDDVSCVIPSLLIQPLVENAIVHGIQPCKGKGVVTI
GINECGNRVRISVRDTGNGIDPAVVARVEADEMPGNKIGLLNVHHRVKLLYGEGLHIRNLTPGTEIAFYVPNNSTPQALT
ESLLS

Sequences:

>Translated_565_residues
MHEIFTMMLAVYDRAALMLICLFFLIRLRLFRELLHKSAHTPKELLAVTAIFSLFALFSTWSGVPVEGSLVNVRIIAVMS
GGILFGPWVGAIVGAIAGVHRYLIDIDGVTAVPCFITSIVAGLLSGLINRKVAREQRWKIGILAGMMCETLTMILVVVWA
PSLSLGVDIVSKIGIPMILGSVCIGFIVLLVQSVEGEKEASAARQAKLALDIANKTLPLFRHVNSDSLRQVCEIIRRDIT
ADAVAITNTEHVLAYVGVGEANYQRHDDMISPTTRQAIRYGKIIIKNNDEAHRTPEIHSLMVIPLWEKGVVTGTLKIYYC
HAHRITSTLQEMAIGLSQIISTQLEVSRAEQLREMANKAELRALQSKINPHFLFNALNAISSSIRLNPDTARQLIFNLSR
YLRYNIELKDDEQIDIKRELYQIKDYIAIEQARFGDKLTVIYDIDDDVSCVIPSLLIQPLVENAIVHGIQPCKGKGVVTI
GINECGNRVRISVRDTGNGIDPAVVARVEADEMPGNKIGLLNVHHRVKLLYGEGLHIRNLTPGTEIAFYVPNNSTPQALT
ESLLS
>Mature_565_residues
MHEIFTMMLAVYDRAALMLICLFFLIRLRLFRELLHKSAHTPKELLAVTAIFSLFALFSTWSGVPVEGSLVNVRIIAVMS
GGILFGPWVGAIVGAIAGVHRYLIDIDGVTAVPCFITSIVAGLLSGLINRKVAREQRWKIGILAGMMCETLTMILVVVWA
PSLSLGVDIVSKIGIPMILGSVCIGFIVLLVQSVEGEKEASAARQAKLALDIANKTLPLFRHVNSDSLRQVCEIIRRDIT
ADAVAITNTEHVLAYVGVGEANYQRHDDMISPTTRQAIRYGKIIIKNNDEAHRTPEIHSLMVIPLWEKGVVTGTLKIYYC
HAHRITSTLQEMAIGLSQIISTQLEVSRAEQLREMANKAELRALQSKINPHFLFNALNAISSSIRLNPDTARQLIFNLSR
YLRYNIELKDDEQIDIKRELYQIKDYIAIEQARFGDKLTVIYDIDDDVSCVIPSLLIQPLVENAIVHGIQPCKGKGVVTI
GINECGNRVRISVRDTGNGIDPAVVARVEADEMPGNKIGLLNVHHRVKLLYGEGLHIRNLTPGTEIAFYVPNNSTPQALT
ESLLS

Specific function: Unknown

COG id: COG3275

COG function: function code T; Putative regulator of cell autolysis

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788723, Length=564, Percent_Identity=87.7659574468085, Blast_Score=1032, Evalue=0.0,
Organism=Escherichia coli, GI1788446, Length=520, Percent_Identity=30, Blast_Score=202, Evalue=6e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR010559
- InterPro:   IPR011620 [H]

Pfam domain/function: PF07694 5TM-5TMR_LYT; PF02518 HATPase_c; PF06580 His_kinase [H]

EC number: 2.7.3.-

Molecular weight: Translated: 62532; Mature: 62532

Theoretical pI: Translated: 7.81; Mature: 7.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHEIFTMMLAVYDRAALMLICLFFLIRLRLFRELLHKSAHTPKELLAVTAIFSLFALFST
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC
WSGVPVEGSLVNVRIIAVMSGGILFGPWVGAIVGAIAGVHRYLIDIDGVTAVPCFITSIV
CCCCCCCCCEEEEEEEEEEECCEEEHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHH
AGLLSGLINRKVAREQRWKIGILAGMMCETLTMILVVVWAPSLSLGVDIVSKIGIPMILG
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHH
SVCIGFIVLLVQSVEGEKEASAARQAKLALDIANKTLPLFRHVNSDSLRQVCEIIRRDIT
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHCCC
ADAVAITNTEHVLAYVGVGEANYQRHDDMISPTTRQAIRYGKIIIKNNDEAHRTPEIHSL
CCEEEEECCCEEEEEEECCCCCCHHCCCCCCCHHHHHHHHCEEEEECCCCCCCCCCCCEE
MVIPLWEKGVVTGTLKIYYCHAHRITSTLQEMAIGLSQIISTQLEVSRAEQLREMANKAE
EEEEEECCCEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRALQSKINPHFLFNALNAISSSIRLNPDTARQLIFNLSRYLRYNIELKDDEQIDIKREL
HHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHH
YQIKDYIAIEQARFGDKLTVIYDIDDDVSCVIPSLLIQPLVENAIVHGIQPCKGKGVVTI
HHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE
GINECGNRVRISVRDTGNGIDPAVVARVEADEMPGNKIGLLNVHHRVKLLYGEGLHIRNL
ECCCCCCEEEEEEECCCCCCCHHHEEEEECCCCCCCEEEEEEECEEEEEEECCCEEEECC
TPGTEIAFYVPNNSTPQALTESLLS
CCCCEEEEEECCCCCHHHHHHHHCC
>Mature Secondary Structure
MHEIFTMMLAVYDRAALMLICLFFLIRLRLFRELLHKSAHTPKELLAVTAIFSLFALFST
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC
WSGVPVEGSLVNVRIIAVMSGGILFGPWVGAIVGAIAGVHRYLIDIDGVTAVPCFITSIV
CCCCCCCCCEEEEEEEEEEECCEEEHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHH
AGLLSGLINRKVAREQRWKIGILAGMMCETLTMILVVVWAPSLSLGVDIVSKIGIPMILG
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHH
SVCIGFIVLLVQSVEGEKEASAARQAKLALDIANKTLPLFRHVNSDSLRQVCEIIRRDIT
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHCCC
ADAVAITNTEHVLAYVGVGEANYQRHDDMISPTTRQAIRYGKIIIKNNDEAHRTPEIHSL
CCEEEEECCCEEEEEEECCCCCCHHCCCCCCCHHHHHHHHCEEEEECCCCCCCCCCCCEE
MVIPLWEKGVVTGTLKIYYCHAHRITSTLQEMAIGLSQIISTQLEVSRAEQLREMANKAE
EEEEEECCCEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRALQSKINPHFLFNALNAISSSIRLNPDTARQLIFNLSRYLRYNIELKDDEQIDIKREL
HHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHH
YQIKDYIAIEQARFGDKLTVIYDIDDDVSCVIPSLLIQPLVENAIVHGIQPCKGKGVVTI
HHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE
GINECGNRVRISVRDTGNGIDPAVVARVEADEMPGNKIGLLNVHHRVKLLYGEGLHIRNL
ECCCCCCEEEEEEECCCCCCCHHHEEEEECCCCCCCEEEEEEECEEEEEEECCCEEEECC
TPGTEIAFYVPNNSTPQALTESLLS
CCCCEEEEEECCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]