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The map label for this gene is yhjC [H]

Identifier: 152970976

GI number: 152970976

Start: 2655992

End: 2656687

Strand: Direct

Name: yhjC [H]

Synonym: KPN_02434

Alternate gene names: 152970976

Gene position: 2655992-2656687 (Clockwise)

Preceding gene: 152970975

Following gene: 152970981

Centisome position: 49.97

GC content: 55.75

Gene sequence:

>696_bases
ATGGAGGATGCTGAAAACAGCCTGTCCAGTGCGGCGATGACGCCCAGGGGACGGCTACGGGTGGATGTACCGAGTCCGCT
GGCCCGCCTTATTCTGGTGCCGGCGCTACCGGCTTTCCACGACCGCTACCCTGATATCCAGATCGACATGGGTGTGAGCG
ACCGGGTAGTGGCTCTGATCGGCGACAACGTGGATTGCGTTCTGCGCGGAGGTCAAATCACCGACCAGTCCCTAATCGCA
CGCCATGTCGGCGATTTGCAAATCGGCGTCTACGTCGCCCCCAGCTATGTGGAACGCCTTGGCGCTCCCGCACACCCGCG
CGAGCTGCAAAATACTGACCATTGCATAGTGGGATTCTTGTCCTCACGCACCAGTAAGATTGATCCTTTGGTACTGTGCA
GTGAGAATGAACGTATTGAAATCACGGGCAACTACGTACTTGCCGTGGATGATGGCAATGCTTACCTCGAAGCTGGGTTA
GTTGGCTTAGGCGTGATTGCGCTGCCCAACTATATGGCGGCAGCGCATCAGGCCGTTGGCGCTTTGATTCCATTATTTAC
ACAATGGCGGATTAGCCCAATGCCTCTGTACCTGGCGTTTCCACCGAACCGCCATGTCAACGCCAAGCTGCGCGTTTTTA
TTGACTGGATCGTTGAATTGATGGAGCAGCATGTCCCCATTGCCAACAATCAGTGA

Upstream 100 bases:

>100_bases
GTGATCCCCGCAGGTGAAAATCAGCGATGCTGCTCCCAACCTTATGGCTACAGACTTTCGATCCGGCGGTAACCGCTGGG
TCTGCCGCTGCGTAGCAGAC

Downstream 100 bases:

>100_bases
CGCCATCCCCTGATTCGCTTATCAGCGGCGATGGGGTTCAGCGGTAGTGACTGTGGTCAGGCGTGTTTTGACAATAGGGA
TTCAGCAGAACTCATCCGTC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MEDAENSLSSAAMTPRGRLRVDVPSPLARLILVPALPAFHDRYPDIQIDMGVSDRVVALIGDNVDCVLRGGQITDQSLIA
RHVGDLQIGVYVAPSYVERLGAPAHPRELQNTDHCIVGFLSSRTSKIDPLVLCSENERIEITGNYVLAVDDGNAYLEAGL
VGLGVIALPNYMAAAHQAVGALIPLFTQWRISPMPLYLAFPPNRHVNAKLRVFIDWIVELMEQHVPIANNQ

Sequences:

>Translated_231_residues
MEDAENSLSSAAMTPRGRLRVDVPSPLARLILVPALPAFHDRYPDIQIDMGVSDRVVALIGDNVDCVLRGGQITDQSLIA
RHVGDLQIGVYVAPSYVERLGAPAHPRELQNTDHCIVGFLSSRTSKIDPLVLCSENERIEITGNYVLAVDDGNAYLEAGL
VGLGVIALPNYMAAAHQAVGALIPLFTQWRISPMPLYLAFPPNRHVNAKLRVFIDWIVELMEQHVPIANNQ
>Mature_231_residues
MEDAENSLSSAAMTPRGRLRVDVPSPLARLILVPALPAFHDRYPDIQIDMGVSDRVVALIGDNVDCVLRGGQITDQSLIA
RHVGDLQIGVYVAPSYVERLGAPAHPRELQNTDHCIVGFLSSRTSKIDPLVLCSENERIEITGNYVLAVDDGNAYLEAGL
VGLGVIALPNYMAAAHQAVGALIPLFTQWRISPMPLYLAFPPNRHVNAKLRVFIDWIVELMEQHVPIANNQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=214, Percent_Identity=29.9065420560748, Blast_Score=113, Evalue=8e-27,
Organism=Escherichia coli, GI1786401, Length=230, Percent_Identity=29.5652173913043, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI1787128, Length=214, Percent_Identity=26.6355140186916, Blast_Score=83, Evalue=1e-17,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 25289; Mature: 25289

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEDAENSLSSAAMTPRGRLRVDVPSPLARLILVPALPAFHDRYPDIQIDMGVSDRVVALI
CCCHHHHHHHHCCCCCCCEEEECCCHHHHHHHHCCCCHHHCCCCCEEEECCCCCEEEEEE
GDNVDCVLRGGQITDQSLIARHVGDLQIGVYVAPSYVERLGAPAHPRELQNTDHCIVGFL
CCCEEEEEECCCCCHHHHHHHHCCCEEEEEEECHHHHHHCCCCCCCHHHCCCCCEEEEEE
SSRTSKIDPLVLCSENERIEITGNYVLAVDDGNAYLEAGLVGLGVIALPNYMAAAHQAVG
CCCCCCCCEEEEECCCCEEEEECCEEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHHHH
ALIPLFTQWRISPMPLYLAFPPNRHVNAKLRVFIDWIVELMEQHVPIANNQ
HHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MEDAENSLSSAAMTPRGRLRVDVPSPLARLILVPALPAFHDRYPDIQIDMGVSDRVVALI
CCCHHHHHHHHCCCCCCCEEEECCCHHHHHHHHCCCCHHHCCCCCEEEECCCCCEEEEEE
GDNVDCVLRGGQITDQSLIARHVGDLQIGVYVAPSYVERLGAPAHPRELQNTDHCIVGFL
CCCEEEEEECCCCCHHHHHHHHCCCEEEEEEECHHHHHHCCCCCCCHHHCCCCCEEEEEE
SSRTSKIDPLVLCSENERIEITGNYVLAVDDGNAYLEAGLVGLGVIALPNYMAAAHQAVG
CCCCCCCCEEEEECCCCEEEEECCEEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHHHH
ALIPLFTQWRISPMPLYLAFPPNRHVNAKLRVFIDWIVELMEQHVPIANNQ
HHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]