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The map label for this gene is ltrA [H]

Identifier: 152970697

GI number: 152970697

Start: 2353868

End: 2354779

Strand: Direct

Name: ltrA [H]

Synonym: KPN_02148

Alternate gene names: 152970697

Gene position: 2353868-2354779 (Clockwise)

Preceding gene: 152970692

Following gene: 152970698

Centisome position: 44.29

GC content: 64.8

Gene sequence:

>912_bases
ATGAATACCTCTATTCCCTGGGAGTGGTACCGAACCTTTCTCGCCGTCCTGCAGGAAGGCTCTTTATCGGGCGCATCGCG
TACCCTGAACATCACTCAGCCGACGGCGGGGCGCCATATTGCCGGGCTGGAAAACGCCCTCGGCCAGGCCTTATTTACCC
GCTCGCAAACCGGCCTGCTGGCGACCGACGCGGCGCTGGCGCTGCGGGTGCACGCCGAGGCGATGGACAATACCGCCCGG
GCGCTGGAACGCACCGCGGCTAACTTCAGTCGCGACAGAGCCGAGCTGCGTGGCGTGGTGCGGGTGGCCGCCAGCGAGGT
GGTCGGCGCCGAGGTGCTGCCGCCGCTGGTTGCCCGGCTCAGGCAGGCGTGCCCGAATATCGTCATCGAACTGATGCTCT
CCAATCGGTTTCAGGATCTGCTTCACCGGGAGGCGGATATTGCGGTGCGGATGGTCGCCCCGCAGCAGGAGCAGCTTATC
GCCCGCCGTCTCGGCAGGATCGAGCTTGGGTTACATGCCACCGCCGCCTACCTGACGCGCCAGGGCCTGCCCGCGACCCT
CGACGATCTGGCCAGCCACGCGCTAATTGGTTTTGATAGCGCCACCCCTCTCGTGCGCCGGGCGCTGCAGGCTTACCCCC
GTTTTCAGCGCGAGGCGTTCGCGATGCGGACCGATAGCGACCTCGCCCAGTTGAGCCTGATCCGCGCCGGAGCGGGGATC
GGCATCTGCCAGGCGCCTCTTGCGGATGGCATTATTCCCCTGCAGCGAGTGCTGGCGGCCGACTTTTCTCTGTATCTTGA
TACCTGGCTGGTAATGCATGAGGATCTGCGCCACAGCCCTGCCTGTAAGCGGGTATTTGATTTTCTCGCCCAGGGGTTGC
AGGCGTATATTCGTGGCCCACTGGCGAGCTGA

Upstream 100 bases:

>100_bases
TCATCCTCTTTCCCCGTTCGCTAATGGATGCTTGACAGCCTACCTGTGGCTCATATCAAATGAAATTGCATACCATCGTC
GAGCGGCTATACATATTTGT

Downstream 100 bases:

>100_bases
CCCGCCCCATCGCGCGGGCATTTCATTGCCTGCGGAAATAGTCACTCATTGACACTGTAAATATGGCATTGTATAAAACC
CCGCCCCAATAATGAGTTTC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MNTSIPWEWYRTFLAVLQEGSLSGASRTLNITQPTAGRHIAGLENALGQALFTRSQTGLLATDAALALRVHAEAMDNTAR
ALERTAANFSRDRAELRGVVRVAASEVVGAEVLPPLVARLRQACPNIVIELMLSNRFQDLLHREADIAVRMVAPQQEQLI
ARRLGRIELGLHATAAYLTRQGLPATLDDLASHALIGFDSATPLVRRALQAYPRFQREAFAMRTDSDLAQLSLIRAGAGI
GICQAPLADGIIPLQRVLAADFSLYLDTWLVMHEDLRHSPACKRVFDFLAQGLQAYIRGPLAS

Sequences:

>Translated_303_residues
MNTSIPWEWYRTFLAVLQEGSLSGASRTLNITQPTAGRHIAGLENALGQALFTRSQTGLLATDAALALRVHAEAMDNTAR
ALERTAANFSRDRAELRGVVRVAASEVVGAEVLPPLVARLRQACPNIVIELMLSNRFQDLLHREADIAVRMVAPQQEQLI
ARRLGRIELGLHATAAYLTRQGLPATLDDLASHALIGFDSATPLVRRALQAYPRFQREAFAMRTDSDLAQLSLIRAGAGI
GICQAPLADGIIPLQRVLAADFSLYLDTWLVMHEDLRHSPACKRVFDFLAQGLQAYIRGPLAS
>Mature_303_residues
MNTSIPWEWYRTFLAVLQEGSLSGASRTLNITQPTAGRHIAGLENALGQALFTRSQTGLLATDAALALRVHAEAMDNTAR
ALERTAANFSRDRAELRGVVRVAASEVVGAEVLPPLVARLRQACPNIVIELMLSNRFQDLLHREADIAVRMVAPQQEQLI
ARRLGRIELGLHATAAYLTRQGLPATLDDLASHALIGFDSATPLVRRALQAYPRFQREAFAMRTDSDLAQLSLIRAGAGI
GICQAPLADGIIPLQRVLAADFSLYLDTWLVMHEDLRHSPACKRVFDFLAQGLQAYIRGPLAS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=186, Percent_Identity=27.9569892473118, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI145693193, Length=186, Percent_Identity=27.4193548387097, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1789639, Length=187, Percent_Identity=24.5989304812834, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787601, Length=180, Percent_Identity=26.1111111111111, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33134; Mature: 33134

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTSIPWEWYRTFLAVLQEGSLSGASRTLNITQPTAGRHIAGLENALGQALFTRSQTGLL
CCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCC
ATDAALALRVHAEAMDNTARALERTAANFSRDRAELRGVVRVAASEVVGAEVLPPLVARL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RQACPNIVIELMLSNRFQDLLHREADIAVRMVAPQQEQLIARRLGRIELGLHATAAYLTR
HHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHCCHHHHHHHHHHHHHH
QGLPATLDDLASHALIGFDSATPLVRRALQAYPRFQREAFAMRTDSDLAQLSLIRAGAGI
CCCCCCHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
GICQAPLADGIIPLQRVLAADFSLYLDTWLVMHEDLRHSPACKRVFDFLAQGLQAYIRGP
CHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
LAS
CCC
>Mature Secondary Structure
MNTSIPWEWYRTFLAVLQEGSLSGASRTLNITQPTAGRHIAGLENALGQALFTRSQTGLL
CCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCC
ATDAALALRVHAEAMDNTARALERTAANFSRDRAELRGVVRVAASEVVGAEVLPPLVARL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RQACPNIVIELMLSNRFQDLLHREADIAVRMVAPQQEQLIARRLGRIELGLHATAAYLTR
HHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHCCHHHHHHHHHHHHHH
QGLPATLDDLASHALIGFDSATPLVRRALQAYPRFQREAFAMRTDSDLAQLSLIRAGAGI
CCCCCCHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
GICQAPLADGIIPLQRVLAADFSLYLDTWLVMHEDLRHSPACKRVFDFLAQGLQAYIRGP
CHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
LAS
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8748036 [H]