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The map label for this gene is yhjC [H]

Identifier: 152970576

GI number: 152970576

Start: 2220831

End: 2221766

Strand: Direct

Name: yhjC [H]

Synonym: KPN_02027

Alternate gene names: 152970576

Gene position: 2220831-2221766 (Clockwise)

Preceding gene: 152970574

Following gene: 152970579

Centisome position: 41.78

GC content: 59.29

Gene sequence:

>936_bases
ATGGACAGCCTCACCTCGCTGACGTCCTTTGTCCGCACCGCCGAAACGCTAAGCTTTGTTCAGGCCGCCAGGCTGCTGGG
CATATCTGCCTCGGCGGTGGGTAAGAATGTCGCCCGGCTTGAGCATAAACTGGGGGTCCGGCTGTTCAACCGCAGCACCA
GAAACGTCAGCCTGACGGCGGAGGGGGCCGCATTTCTGACACGCTGCCAGAGTATCCTGGAGCAGATCCAGGAGGCCGAG
TCAGAGCTGACCAGCAGTCTCTCACAGCCCACCGGCAAACTGAGGATTTCACTGCCCGTCATTGGCTACCGCCTGTTGCT
CCCCGCCCTCACCGCCTTTAGCCGTCTTTATCCGCAGGTTGAACTGGATCTCGACTTTAGCGACCGGCTGGTCAATCTGA
TCGATGAGGGAGTTGATGTCGCTATCCGCAGCGGTGAATTAGCGGACTCCCGCTTGATCGCCAGAAAGCTGGGAGGCTTT
CGTTTTGTGCTCTGCGCCAGTCCGGCCTATCTGGCGGAATACGGCGCCCCCGACTCGCCAGCGGAATTGGCGGCGCACAA
GTGCATTTTTTTCCGCTTCCCCGCGACGGGGCTGATCCAGCCCTGGGAACTGCGCGGTATGCGACTGACGGGAGATTTCA
GGTCCGCTGCCGTGATGACGGTCAATAACATTGAGGCCGCCATTCGCTTAAGCGCGGCGGGGATGGGCATCGCTTATGTG
CCTGATTTTGTCGTGCGCGAGGCAATGGATGAGGGACAACTGCAGGAGGTGTTGCCCGGGTGTTGCATCAAGGATGGGCA
TTTCTCGGTCCTGTGGCCCGCCAGCCGCTATCTGTCACCGCGAATACGCTGTTTTATCGATTTTATGGCTGCGGCAGAGA
TACCCTTGTCACCCGCATCGGCACCCCCACCCCTTGTATCTAACAATTTGAGGTGA

Upstream 100 bases:

>100_bases
GTCGGCAAGGAATGAATAAACTGTCGCCATCCTATTGCGGATGTTATTGCCGATAAATAGACTGAAAATATCTTCTTAAG
AGACATAAGGTTTATAATCG

Downstream 100 bases:

>100_bases
TTAGCTACCCCCACTGAAGCAGAGTGTGCCGCCCCCTTCCCTTTAGGTCAGAAAAGTCTGCACCGCTGAATCCTGATCTG
CAGCGTATGGCCCTCCGCTT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MDSLTSLTSFVRTAETLSFVQAARLLGISASAVGKNVARLEHKLGVRLFNRSTRNVSLTAEGAAFLTRCQSILEQIQEAE
SELTSSLSQPTGKLRISLPVIGYRLLLPALTAFSRLYPQVELDLDFSDRLVNLIDEGVDVAIRSGELADSRLIARKLGGF
RFVLCASPAYLAEYGAPDSPAELAAHKCIFFRFPATGLIQPWELRGMRLTGDFRSAAVMTVNNIEAAIRLSAAGMGIAYV
PDFVVREAMDEGQLQEVLPGCCIKDGHFSVLWPASRYLSPRIRCFIDFMAAAEIPLSPASAPPPLVSNNLR

Sequences:

>Translated_311_residues
MDSLTSLTSFVRTAETLSFVQAARLLGISASAVGKNVARLEHKLGVRLFNRSTRNVSLTAEGAAFLTRCQSILEQIQEAE
SELTSSLSQPTGKLRISLPVIGYRLLLPALTAFSRLYPQVELDLDFSDRLVNLIDEGVDVAIRSGELADSRLIARKLGGF
RFVLCASPAYLAEYGAPDSPAELAAHKCIFFRFPATGLIQPWELRGMRLTGDFRSAAVMTVNNIEAAIRLSAAGMGIAYV
PDFVVREAMDEGQLQEVLPGCCIKDGHFSVLWPASRYLSPRIRCFIDFMAAAEIPLSPASAPPPLVSNNLR
>Mature_311_residues
MDSLTSLTSFVRTAETLSFVQAARLLGISASAVGKNVARLEHKLGVRLFNRSTRNVSLTAEGAAFLTRCQSILEQIQEAE
SELTSSLSQPTGKLRISLPVIGYRLLLPALTAFSRLYPQVELDLDFSDRLVNLIDEGVDVAIRSGELADSRLIARKLGGF
RFVLCASPAYLAEYGAPDSPAELAAHKCIFFRFPATGLIQPWELRGMRLTGDFRSAAVMTVNNIEAAIRLSAAGMGIAYV
PDFVVREAMDEGQLQEVLPGCCIKDGHFSVLWPASRYLSPRIRCFIDFMAAAEIPLSPASAPPPLVSNNLR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=294, Percent_Identity=36.0544217687075, Blast_Score=189, Evalue=2e-49,
Organism=Escherichia coli, GI1786401, Length=288, Percent_Identity=38.1944444444444, Blast_Score=176, Evalue=2e-45,
Organism=Escherichia coli, GI1787128, Length=302, Percent_Identity=29.1390728476821, Blast_Score=157, Evalue=8e-40,
Organism=Escherichia coli, GI1789639, Length=263, Percent_Identity=34.6007604562738, Blast_Score=143, Evalue=2e-35,
Organism=Escherichia coli, GI87081978, Length=259, Percent_Identity=36.2934362934363, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1787589, Length=289, Percent_Identity=29.4117647058824, Blast_Score=125, Evalue=4e-30,
Organism=Escherichia coli, GI1789440, Length=292, Percent_Identity=28.7671232876712, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1789173, Length=187, Percent_Identity=31.0160427807487, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1790011, Length=257, Percent_Identity=24.9027237354086, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788706, Length=291, Percent_Identity=23.7113402061856, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1787879, Length=293, Percent_Identity=26.6211604095563, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1786448, Length=144, Percent_Identity=34.0277777777778, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788481, Length=314, Percent_Identity=25.796178343949, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787601, Length=146, Percent_Identity=30.1369863013699, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI145693105, Length=259, Percent_Identity=24.3243243243243, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786713, Length=258, Percent_Identity=25.968992248062, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1786508, Length=261, Percent_Identity=23.7547892720307, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33863; Mature: 33863

Theoretical pI: Translated: 7.30; Mature: 7.30

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSLTSLTSFVRTAETLSFVQAARLLGISASAVGKNVARLEHKLGVRLFNRSTRNVSLTA
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
EGAAFLTRCQSILEQIQEAESELTSSLSQPTGKLRISLPVIGYRLLLPALTAFSRLYPQV
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCE
ELDLDFSDRLVNLIDEGVDVAIRSGELADSRLIARKLGGFRFVLCASPAYLAEYGAPDSP
EEECCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCEEEEEECCCHHHHHCCCCCCH
AELAAHKCIFFRFPATGLIQPWELRGMRLTGDFRSAAVMTVNNIEAAIRLSAAGMGIAYV
HHHHHCEEEEEECCCCCCCCCHHHCCEEEECCCCCEEEEEEECHHEEEEEECCCCCHHHH
PDFVVREAMDEGQLQEVLPGCCIKDGHFSVLWPASRYLSPRIRCFIDFMAAAEIPLSPAS
HHHHHHHHHCCCCHHHHCCCCEECCCCEEEECCCHHHHCHHHHHHHHHHHHCCCCCCCCC
APPPLVSNNLR
CCCCCCCCCCC
>Mature Secondary Structure
MDSLTSLTSFVRTAETLSFVQAARLLGISASAVGKNVARLEHKLGVRLFNRSTRNVSLTA
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
EGAAFLTRCQSILEQIQEAESELTSSLSQPTGKLRISLPVIGYRLLLPALTAFSRLYPQV
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCE
ELDLDFSDRLVNLIDEGVDVAIRSGELADSRLIARKLGGFRFVLCASPAYLAEYGAPDSP
EEECCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCEEEEEECCCHHHHHCCCCCCH
AELAAHKCIFFRFPATGLIQPWELRGMRLTGDFRSAAVMTVNNIEAAIRLSAAGMGIAYV
HHHHHCEEEEEECCCCCCCCCHHHCCEEEECCCCCEEEEEEECHHEEEEEECCCCCHHHH
PDFVVREAMDEGQLQEVLPGCCIKDGHFSVLWPASRYLSPRIRCFIDFMAAAEIPLSPAS
HHHHHHHHHCCCCHHHHCCCCEECCCCEEEECCCHHHHCHHHHHHHHHHHHCCCCCCCCC
APPPLVSNNLR
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]