Click here to switch to the map view.

The map label for this gene is yhjC [H]

Identifier: 152970289

GI number: 152970289

Start: 1920179

End: 1921084

Strand: Direct

Name: yhjC [H]

Synonym: KPN_01737

Alternate gene names: 152970289

Gene position: 1920179-1921084 (Clockwise)

Preceding gene: 152970287

Following gene: 152970291

Centisome position: 36.13

GC content: 52.65

Gene sequence:

>906_bases
ATGGATCTCTTCTCAGCAATGCGCATATTTATCAGGGTGGTTGAACGGGGCAGCATGTCGGCTGCAGCCCGCGATCTCGG
TATTGGCCAGCCCGCCGTGAGTGAAAGAATAGAAAAACTGGAAGCTCATCTTGGGACACGTTTGCTTAGGCGCAACACGC
GTAACATGTCTCTAACGCAAAGCGGTAACGTGTTTTATGAGCGAAGCAAAACGGCCGTTCAGGCGGCAGAGCATGCTCTT
TCTGTGAATGAGGAAAATCAGGGGCTGCAAGGCAAAATCCGTATTGCCGCGCCCTATTCCGCCGGAGAAAGCCTGCTGAT
GCCTGCATTGTTGCAGCTTCAGAACGAGCATCCGGAGCTACAGGTCGATGTCATTTTTAACGACCGCGTCATCAATCCCG
TCACCGAGGGGGTCGATTTATCGCTGAGATTAGGTGATGTCTCCGAAGGTTTTTTTGTCGCACGCCCGCTTGGCACCGTG
CGCAGAGTGTTACTCGCCTCTCCGGCTCTGCTGGCGAAAATGGGTCATCCTGACACGCCGGATGCGCTGACAGATTATCC
ATTTGCTGCTGTTTCCGGTGTATTCGCCAGTAATCGCATTCAATTGGTCGCTTCCGAAGATCAACTCATTAATGTTCCCG
TCAATATTCAATTTCAGTCCACGCACTGGCGGAGTGTCCTCTCCTGGTTATTAGCGGGACATGCCATTGGTGTTTTGCAA
AGTCCGGTTTGCAGAAAAGAAATTGCAGACGGCGCGCTCATCCCCCTCTTAAGCCACTATCCGATCCCGCCATTTAGTGC
CTGGTTGCTCCATCCACCAGCTGGGATGATGTCGTATGAAACGCGAATTTGTGCCTCCCTGCTGGAGGGCTATATCAGAG
ATTTGTTGCTTGAGCCGGCCGGCTGA

Upstream 100 bases:

>100_bases
CTGACTCAGGCCTTGAGTCTGGATTTTTCATCATTTCGCAGTAAAGCAGTAGATACCTGTCCCCACTTACATTTATCGGT
AAAGCCAATATAATTGGTGA

Downstream 100 bases:

>100_bases
ATAAAACAGCGCTGCCCTGGCGCGCTGAAGATGGCCTCTTGTTAATGACTCAATCTCTGATGCATGAAATCAATAAGCGC
TCTTGTTTTTGCCGGCAAGT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MDLFSAMRIFIRVVERGSMSAAARDLGIGQPAVSERIEKLEAHLGTRLLRRNTRNMSLTQSGNVFYERSKTAVQAAEHAL
SVNEENQGLQGKIRIAAPYSAGESLLMPALLQLQNEHPELQVDVIFNDRVINPVTEGVDLSLRLGDVSEGFFVARPLGTV
RRVLLASPALLAKMGHPDTPDALTDYPFAAVSGVFASNRIQLVASEDQLINVPVNIQFQSTHWRSVLSWLLAGHAIGVLQ
SPVCRKEIADGALIPLLSHYPIPPFSAWLLHPPAGMMSYETRICASLLEGYIRDLLLEPAG

Sequences:

>Translated_301_residues
MDLFSAMRIFIRVVERGSMSAAARDLGIGQPAVSERIEKLEAHLGTRLLRRNTRNMSLTQSGNVFYERSKTAVQAAEHAL
SVNEENQGLQGKIRIAAPYSAGESLLMPALLQLQNEHPELQVDVIFNDRVINPVTEGVDLSLRLGDVSEGFFVARPLGTV
RRVLLASPALLAKMGHPDTPDALTDYPFAAVSGVFASNRIQLVASEDQLINVPVNIQFQSTHWRSVLSWLLAGHAIGVLQ
SPVCRKEIADGALIPLLSHYPIPPFSAWLLHPPAGMMSYETRICASLLEGYIRDLLLEPAG
>Mature_301_residues
MDLFSAMRIFIRVVERGSMSAAARDLGIGQPAVSERIEKLEAHLGTRLLRRNTRNMSLTQSGNVFYERSKTAVQAAEHAL
SVNEENQGLQGKIRIAAPYSAGESLLMPALLQLQNEHPELQVDVIFNDRVINPVTEGVDLSLRLGDVSEGFFVARPLGTV
RRVLLASPALLAKMGHPDTPDALTDYPFAAVSGVFASNRIQLVASEDQLINVPVNIQFQSTHWRSVLSWLLAGHAIGVLQ
SPVCRKEIADGALIPLLSHYPIPPFSAWLLHPPAGMMSYETRICASLLEGYIRDLLLEPAG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=310, Percent_Identity=30.9677419354839, Blast_Score=128, Evalue=4e-31,
Organism=Escherichia coli, GI1786401, Length=263, Percent_Identity=31.9391634980989, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI87081978, Length=291, Percent_Identity=29.2096219931272, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1789440, Length=298, Percent_Identity=27.5167785234899, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1789639, Length=296, Percent_Identity=25.3378378378378, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1787128, Length=184, Percent_Identity=29.8913043478261, Blast_Score=87, Evalue=9e-19,
Organism=Escherichia coli, GI1788297, Length=137, Percent_Identity=32.1167883211679, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1788748, Length=246, Percent_Identity=27.6422764227642, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787589, Length=270, Percent_Identity=23.7037037037037, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1787601, Length=174, Percent_Identity=27.5862068965517, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1788706, Length=143, Percent_Identity=27.972027972028, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32948; Mature: 32948

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLFSAMRIFIRVVERGSMSAAARDLGIGQPAVSERIEKLEAHLGTRLLRRNTRNMSLTQ
CCHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
SGNVFYERSKTAVQAAEHALSVNEENQGLQGKIRIAAPYSAGESLLMPALLQLQNEHPEL
CCCEEEECHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCE
QVDVIFNDRVINPVTEGVDLSLRLGDVSEGFFVARPLGTVRRVLLASPALLAKMGHPDTP
EEEEEECCEECCCCCCCCEEEEEECCCCCCEEEECCHHHHHHHHHHCCHHHHHCCCCCCC
DALTDYPFAAVSGVFASNRIQLVASEDQLINVPVNIQFQSTHWRSVLSWLLAGHAIGVLQ
CHHHCCCHHHHHHHHCCCEEEEEECCCCEEECCEEEEECCHHHHHHHHHHHHHHHHHHHC
SPVCRKEIADGALIPLLSHYPIPPFSAWLLHPPAGMMSYETRICASLLEGYIRDLLLEPA
CCHHHHHHCCCCHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
G
C
>Mature Secondary Structure
MDLFSAMRIFIRVVERGSMSAAARDLGIGQPAVSERIEKLEAHLGTRLLRRNTRNMSLTQ
CCHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
SGNVFYERSKTAVQAAEHALSVNEENQGLQGKIRIAAPYSAGESLLMPALLQLQNEHPEL
CCCEEEECHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCE
QVDVIFNDRVINPVTEGVDLSLRLGDVSEGFFVARPLGTVRRVLLASPALLAKMGHPDTP
EEEEEECCEECCCCCCCCEEEEEECCCCCCEEEECCHHHHHHHHHHCCHHHHHCCCCCCC
DALTDYPFAAVSGVFASNRIQLVASEDQLINVPVNIQFQSTHWRSVLSWLLAGHAIGVLQ
CHHHCCCHHHHHHHHCCCEEEEEECCCCEEECCEEEEECCHHHHHHHHHHHHHHHHHHHC
SPVCRKEIADGALIPLLSHYPIPPFSAWLLHPPAGMMSYETRICASLLEGYIRDLLLEPA
CCHHHHHHCCCCHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
G
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]