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The map label for this gene is rbsC [H]

Identifier: 152970285

GI number: 152970285

Start: 1914621

End: 1915601

Strand: Direct

Name: rbsC [H]

Synonym: KPN_01733

Alternate gene names: 152970285

Gene position: 1914621-1915601 (Clockwise)

Preceding gene: 152970284

Following gene: 152970286

Centisome position: 36.02

GC content: 59.84

Gene sequence:

>981_bases
ATGATCCAGCATTCGCTGCCGCGCCGCCTGCTGCATAACCATTCAGGCGTAGTCAGCATCGCGCTCTTTTTCGTCTTCTG
CTGCGTGGTGTTTTCGCTGATCACCAGCAACTTTCTCACCGGCACCAACTGGCTCAACATTATCCGTCAGAGCGCCCCGC
TGCTGATCGTCGCGACGGCAATGACTCTGGTCATTACCACCGGCGGTATCGATCTGTCGGTAGGCTCCACCCTGGCGCTG
GTCGGCGCGCTCTCCGCTATCGCCCTGAATAGCTGGGGTCTGCCGTGGCCGGTGGTACTCCTCGGCGGCTTGCTGCTAGG
CGGATTCGTTGGCGCCATCAACGGCTTCTTTATTGCCTATGAAGGCATTCCGGCGTTTATCGTCACGCTCGCCACCCTGG
CCGTAGTTCGCGGCATCGCGCTGCTGGTCACCCAGGGCTACTCGATTCCGGTACCGGCTGACAGCCTGTTTACCTTTATC
GGACGCGCGTGGGTCGTCGGGATCCCCATGCCCGCACTGCTCGGCATTCTGATTCTGCTGATCGGGCATATCGTTCTCAA
CCATATGCGCTTTGGCCGCTACGTGACCGCCATCGGCGCTAACGCCGAAGGCGCGCGGCGCAGCGGCATTAACACCAAAG
CGGTCACCATGAAGGTCTATATCATCAGCGGAATGGCCGCCGCGCTGGCGGGGATGATCATTACCGCACGCCTCGGCAGC
GGCTCCTCCAACCAGGGCGAAGGCTTTGAACTGCAGGTCATTGCTGCCGTTGTGCTAGGCAGCACCAGTCTGTTTGGCGG
CTTCGGAACTATTATTGGCACGCTGCTGGGCGCACTGTCGATTGCGGTCATTCAGAACGGGCTGATCCTGTCGCATATTT
CGCCGTTTTACACCCAGATATCCACCGGCACCATTATCCTGCTGGCTATCTGGCTGAACACCCGCATTCTCAACCCGACG
CGCTCCGCGGCAAAAGGATAG

Upstream 100 bases:

>100_bases
CGATATCGTTAACCTGATTGTGGGCGAAAAATTCACCGCCCGCTCTGCGGCAGCACATTGAGGTAACAGGATGAGTATCA
TGAATTTAAGCAGCTCACGC

Downstream 100 bases:

>100_bases
CTGATGAAAGGTTCAATTTTTCGCCATCCCTCCCCGCTGCCGGTTGGCGTTAGCAGCGGTTATGTAATGACTGTGCTTGG
CCCACTGCCGATTAACGAAA

Product: putative ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 326

Protein sequence:

>326_residues
MIQHSLPRRLLHNHSGVVSIALFFVFCCVVFSLITSNFLTGTNWLNIIRQSAPLLIVATAMTLVITTGGIDLSVGSTLAL
VGALSAIALNSWGLPWPVVLLGGLLLGGFVGAINGFFIAYEGIPAFIVTLATLAVVRGIALLVTQGYSIPVPADSLFTFI
GRAWVVGIPMPALLGILILLIGHIVLNHMRFGRYVTAIGANAEGARRSGINTKAVTMKVYIISGMAAALAGMIITARLGS
GSSNQGEGFELQVIAAVVLGSTSLFGGFGTIIGTLLGALSIAVIQNGLILSHISPFYTQISTGTIILLAIWLNTRILNPT
RSAAKG

Sequences:

>Translated_326_residues
MIQHSLPRRLLHNHSGVVSIALFFVFCCVVFSLITSNFLTGTNWLNIIRQSAPLLIVATAMTLVITTGGIDLSVGSTLAL
VGALSAIALNSWGLPWPVVLLGGLLLGGFVGAINGFFIAYEGIPAFIVTLATLAVVRGIALLVTQGYSIPVPADSLFTFI
GRAWVVGIPMPALLGILILLIGHIVLNHMRFGRYVTAIGANAEGARRSGINTKAVTMKVYIISGMAAALAGMIITARLGS
GSSNQGEGFELQVIAAVVLGSTSLFGGFGTIIGTLLGALSIAVIQNGLILSHISPFYTQISTGTIILLAIWLNTRILNPT
RSAAKG
>Mature_326_residues
MIQHSLPRRLLHNHSGVVSIALFFVFCCVVFSLITSNFLTGTNWLNIIRQSAPLLIVATAMTLVITTGGIDLSVGSTLAL
VGALSAIALNSWGLPWPVVLLGGLLLGGFVGAINGFFIAYEGIPAFIVTLATLAVVRGIALLVTQGYSIPVPADSLFTFI
GRAWVVGIPMPALLGILILLIGHIVLNHMRFGRYVTAIGANAEGARRSGINTKAVTMKVYIISGMAAALAGMIITARLGS
GSSNQGEGFELQVIAAVVLGSTSLFGGFGTIIGTLLGALSIAVIQNGLILSHISPFYTQISTGTIILLAIWLNTRILNPT
RSAAKG

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788896, Length=318, Percent_Identity=35.5345911949685, Blast_Score=165, Evalue=4e-42,
Organism=Escherichia coli, GI1790191, Length=293, Percent_Identity=39.9317406143345, Blast_Score=165, Evalue=4e-42,
Organism=Escherichia coli, GI1789992, Length=360, Percent_Identity=33.0555555555556, Blast_Score=157, Evalue=9e-40,
Organism=Escherichia coli, GI1790524, Length=285, Percent_Identity=37.5438596491228, Blast_Score=145, Evalue=5e-36,
Organism=Escherichia coli, GI145693152, Length=314, Percent_Identity=33.7579617834395, Blast_Score=138, Evalue=4e-34,
Organism=Escherichia coli, GI87082395, Length=325, Percent_Identity=34.1538461538462, Blast_Score=135, Evalue=4e-33,
Organism=Escherichia coli, GI145693214, Length=256, Percent_Identity=35.546875, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI1787793, Length=274, Percent_Identity=35.4014598540146, Blast_Score=104, Evalue=7e-24,
Organism=Escherichia coli, GI1787794, Length=283, Percent_Identity=31.4487632508834, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI1788471, Length=325, Percent_Identity=31.6923076923077, Blast_Score=90, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33975; Mature: 33975

Theoretical pI: Translated: 10.83; Mature: 10.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQHSLPRRLLHNHSGVVSIALFFVFCCVVFSLITSNFLTGTNWLNIIRQSAPLLIVATA
CCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEHHHH
MTLVITTGGIDLSVGSTLALVGALSAIALNSWGLPWPVVLLGGLLLGGFVGAINGFFIAY
HHHHHEECCCEECCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEE
EGIPAFIVTLATLAVVRGIALLVTQGYSIPVPADSLFTFIGRAWVVGIPMPALLGILILL
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHEECCCHHHHHHHHHHH
IGHIVLNHMRFGRYVTAIGANAEGARRSGINTKAVTMKVYIISGMAAALAGMIITARLGS
HHHHHHHHHHHCCEEEEECCCCCCHHHCCCCCEEEEEEEEEHHHHHHHHHHHHHEEECCC
GSSNQGEGFELQVIAAVVLGSTSLFGGFGTIIGTLLGALSIAVIQNGLILSHISPFYTQI
CCCCCCCCEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHH
STGTIILLAIWLNTRILNPTRSAAKG
CCCHHEEHEEHHHCEECCCCHHCCCC
>Mature Secondary Structure
MIQHSLPRRLLHNHSGVVSIALFFVFCCVVFSLITSNFLTGTNWLNIIRQSAPLLIVATA
CCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEHHHH
MTLVITTGGIDLSVGSTLALVGALSAIALNSWGLPWPVVLLGGLLLGGFVGAINGFFIAY
HHHHHEECCCEECCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEE
EGIPAFIVTLATLAVVRGIALLVTQGYSIPVPADSLFTFIGRAWVVGIPMPALLGILILL
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHEECCCHHHHHHHHHHH
IGHIVLNHMRFGRYVTAIGANAEGARRSGINTKAVTMKVYIISGMAAALAGMIITARLGS
HHHHHHHHHHHCCEEEEECCCCCCHHHCCCCCEEEEEEEEEHHHHHHHHHHHHHEEECCC
GSSNQGEGFELQVIAAVVLGSTSLFGGFGTIIGTLLGALSIAVIQNGLILSHISPFYTQI
CCCCCCCCEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHH
STGTIILLAIWLNTRILNPTRSAAKG
CCCHHEEHEEHHHCEECCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]