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The map label for this gene is ycaN [H]

Identifier: 152970270

GI number: 152970270

Start: 1898819

End: 1899685

Strand: Direct

Name: ycaN [H]

Synonym: KPN_01718

Alternate gene names: 152970270

Gene position: 1898819-1899685 (Clockwise)

Preceding gene: 152970267

Following gene: 152970271

Centisome position: 35.72

GC content: 55.82

Gene sequence:

>867_bases
ATGGCGATTGCACGTCATCGCAGCTTCAGCCGTGCGGCAATTGAATTAGGCGTCAGTGCATCAGCGCTGAGTCATGCCCT
GAAGGGACTGGAAACCCGGCTCGGAGTTCGCCTGCTTAATCGCACGACCAAGAGCGTCACCCCTACGGCAGCTGGTGAGG
AACTGGTTCAGTCTGTTCTTCAGCCTTTCGACACCATAGAAGGCGCGCTTGAATCGCTTAACCGGTATCGCAATACCCCT
ACCGGTCGTATCCGCATCAATGCAGCCGTTGAAGCGGCAAATCTTTTGCTTGCGCCGGTCATGCCCGCTTTTATGGATCG
CTATCCCGATATTGAAATCGATATTGTGGCCAGCAACCGAATGGTTGACGTGACTGATGCGGGCTTCGATGCCGGCATCC
GCTACGGTGGCACCGTCCCGGAGGACATGGTTGCCCGGCGTTTATCTGCCGATATTCGCTGGGTTATCGCGGCCTCCCCT
GATTACCTGGAACGCTACGGAACGCCTGAACATCCGGATGATTTATTACACCATCGCTGCATCAGCAATCGTCTCGGTGA
CGATCGGGTTTATCGCTGGGAACTTGCGCGAGACGGCGAAACATACCAAATGACAGTGCCAGGCTCAGTGACGGTCAATC
ATGCCGAAACGGGTCTGGTGGCCGTATTGGGCGGGGCTGGCCTAATGTATTTTCCGGAGCCTCTTGTTGCACCCTATGTC
AAGGATGGACGGCTCCGTCTGGTGCTTACGGAATGGTCCCCACTGGAGGAAGGTTTTCATATCTATTATTCAAGCCGCCG
GCAATTGCCGACCGGGCTTCGCCTTCTGATTGAGTTCATACAGGAGGCCAGGCCGCTGGGGTTGTGA

Upstream 100 bases:

>100_bases
TATCATTTCTTCATCAACGCATTCGGGTTTTAACGCCGCATAAGGAAAACTATTCTGTATGCAAATAAGCAGAGCTGATG
TTGCCGATCTTATTTATTTC

Downstream 100 bases:

>100_bases
AATAGTGCCTCCATACTGAACGATGCGTTATCGGCTTTATCGCCCTGTCGCTTATTCAGAAAGCTCAGTTGCAGGAAGCC
GCAGGGAGTCTGCAAGGCGT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 287

Protein sequence:

>288_residues
MAIARHRSFSRAAIELGVSASALSHALKGLETRLGVRLLNRTTKSVTPTAAGEELVQSVLQPFDTIEGALESLNRYRNTP
TGRIRINAAVEAANLLLAPVMPAFMDRYPDIEIDIVASNRMVDVTDAGFDAGIRYGGTVPEDMVARRLSADIRWVIAASP
DYLERYGTPEHPDDLLHHRCISNRLGDDRVYRWELARDGETYQMTVPGSVTVNHAETGLVAVLGGAGLMYFPEPLVAPYV
KDGRLRLVLTEWSPLEEGFHIYYSSRRQLPTGLRLLIEFIQEARPLGL

Sequences:

>Translated_288_residues
MAIARHRSFSRAAIELGVSASALSHALKGLETRLGVRLLNRTTKSVTPTAAGEELVQSVLQPFDTIEGALESLNRYRNTP
TGRIRINAAVEAANLLLAPVMPAFMDRYPDIEIDIVASNRMVDVTDAGFDAGIRYGGTVPEDMVARRLSADIRWVIAASP
DYLERYGTPEHPDDLLHHRCISNRLGDDRVYRWELARDGETYQMTVPGSVTVNHAETGLVAVLGGAGLMYFPEPLVAPYV
KDGRLRLVLTEWSPLEEGFHIYYSSRRQLPTGLRLLIEFIQEARPLGL
>Mature_287_residues
AIARHRSFSRAAIELGVSASALSHALKGLETRLGVRLLNRTTKSVTPTAAGEELVQSVLQPFDTIEGALESLNRYRNTPT
GRIRINAAVEAANLLLAPVMPAFMDRYPDIEIDIVASNRMVDVTDAGFDAGIRYGGTVPEDMVARRLSADIRWVIAASPD
YLERYGTPEHPDDLLHHRCISNRLGDDRVYRWELARDGETYQMTVPGSVTVNHAETGLVAVLGGAGLMYFPEPLVAPYVK
DGRLRLVLTEWSPLEEGFHIYYSSRRQLPTGLRLLIEFIQEARPLGL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=281, Percent_Identity=39.1459074733096, Blast_Score=231, Evalue=3e-62,
Organism=Escherichia coli, GI1787589, Length=283, Percent_Identity=37.4558303886926, Blast_Score=184, Evalue=7e-48,
Organism=Escherichia coli, GI1786401, Length=287, Percent_Identity=34.8432055749129, Blast_Score=148, Evalue=5e-37,
Organism=Escherichia coli, GI1789440, Length=282, Percent_Identity=26.9503546099291, Blast_Score=120, Evalue=7e-29,
Organism=Escherichia coli, GI145693193, Length=285, Percent_Identity=31.2280701754386, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI87081978, Length=282, Percent_Identity=28.7234042553192, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1789639, Length=270, Percent_Identity=28.5185185185185, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI1788706, Length=250, Percent_Identity=26, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1786448, Length=246, Percent_Identity=27.2357723577236, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1790011, Length=258, Percent_Identity=25.1937984496124, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1788748, Length=113, Percent_Identity=35.3982300884956, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1789173, Length=251, Percent_Identity=26.2948207171315, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31924; Mature: 31793

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIARHRSFSRAAIELGVSASALSHALKGLETRLGVRLLNRTTKSVTPTAAGEELVQSVL
CCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
QPFDTIEGALESLNRYRNTPTGRIRINAAVEAANLLLAPVMPAFMDRYPDIEIDIVASNR
HHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
MVDVTDAGFDAGIRYGGTVPEDMVARRLSADIRWVIAASPDYLERYGTPEHPDDLLHHRC
EEEEECCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEECCHHHHHHCCCCCCHHHHHHHHH
ISNRLGDDRVYRWELARDGETYQMTVPGSVTVNHAETGLVAVLGGAGLMYFPEPLVAPYV
HHHCCCCCCEEEEEEECCCCEEEEEECCEEEECCCCCCEEEEECCCCEEECCCCHHCCCC
KDGRLRLVLTEWSPLEEGFHIYYSSRRQLPTGLRLLIEFIQEARPLGL
CCCCEEEEEECCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
AIARHRSFSRAAIELGVSASALSHALKGLETRLGVRLLNRTTKSVTPTAAGEELVQSVL
CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
QPFDTIEGALESLNRYRNTPTGRIRINAAVEAANLLLAPVMPAFMDRYPDIEIDIVASNR
HHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
MVDVTDAGFDAGIRYGGTVPEDMVARRLSADIRWVIAASPDYLERYGTPEHPDDLLHHRC
EEEEECCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEECCHHHHHHCCCCCCHHHHHHHHH
ISNRLGDDRVYRWELARDGETYQMTVPGSVTVNHAETGLVAVLGGAGLMYFPEPLVAPYV
HHHCCCCCCEEEEEEECCCCEEEEEECCEEEECCCCCCEEEEECCCCEEECCCCHHCCCC
KDGRLRLVLTEWSPLEEGFHIYYSSRRQLPTGLRLLIEFIQEARPLGL
CCCCEEEEEECCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]