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The map label for this gene is ygbI [H]

Identifier: 152970158

GI number: 152970158

Start: 1783401

End: 1784123

Strand: Direct

Name: ygbI [H]

Synonym: KPN_01606

Alternate gene names: 152970158

Gene position: 1783401-1784123 (Clockwise)

Preceding gene: 152970152

Following gene: 152970160

Centisome position: 33.55

GC content: 61.55

Gene sequence:

>723_bases
GTGGAGCAGCGTGGGGCGGTAAGCATTAACGAGCTGACGGAGATCCTAGGCGTGTCCCATATGACCATCCGTCGGGACGT
TAGTAAACTGGAGGAGCAGGGGCTGCTGGTCAGCGTCTCGGGCGGCGTGCGCGCCGTCAGCCGGCTGGCTGCGGAACCCA
GTCATCTGGTGAAAAGCACGCTGCAGAGTGAGGAGAAACAGGCGATCGGCGCGCTGGCGGCGAGTCATATCGCTAAAAAC
AGTTGCATCTATCTGGATGCCGGGACTACCACCCTGGCGCTGGCGCGGGCGATCCTCGACCGGAACGATCTCCAGGTGGT
CACCAATGATTTTGAGATAACCCAGCTGCTGATCGATGCCAGCCAGTGCGGCGTGATCCACACCGGCGGCACTCTGTGCC
GGGAGAACCGCTCCTGCGTGGGCGAATCGGCGGCGCGTACGTTACGCCACCTGGCTATCGATACGGCCTTTATCTCCGCC
AGCGGCTGGGACAGTCGCGGGATTTTCACCCCTGATGAGAACAAGGTTACCGTCAAGGAGACCGTCAGCCAGGTCAGCGC
GAGAAGCATCCTGCTGTGCGACAGTTCGAAATACAATCAGGTGGCCACGTTCATGGCGTTACCTCTGACCCGGTTCACCA
CCATCATTACCGACCGGCATCTCTCCGATGCCGCCGCCAGTCATATCGCCCGGCACGCCTGCGAGGTGCTGCGGGCCGGA
TAA

Upstream 100 bases:

>100_bases
GTCGCCAGGCCCGTAGCCTGGGTGGTGACGCCTGGTGTGAAAAAATGGTAAGGGGAGAGCGGTGATTCCAATAGAACGAC
ATCAGCGTATTTTAGCCCTG

Downstream 100 bases:

>100_bases
CGCGCGCGGCCACCGCCGGGTTAGCGTTGCCAGTGCTCGATCAGCGCCGCGCCGATCCCGGCGATTTGCTGATTTCGCTC
GGCCATGCTCGCCGGCGTAT

Product: putative DEOR-type transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MEQRGAVSINELTEILGVSHMTIRRDVSKLEEQGLLVSVSGGVRAVSRLAAEPSHLVKSTLQSEEKQAIGALAASHIAKN
SCIYLDAGTTTLALARAILDRNDLQVVTNDFEITQLLIDASQCGVIHTGGTLCRENRSCVGESAARTLRHLAIDTAFISA
SGWDSRGIFTPDENKVTVKETVSQVSARSILLCDSSKYNQVATFMALPLTRFTTIITDRHLSDAAASHIARHACEVLRAG

Sequences:

>Translated_240_residues
MEQRGAVSINELTEILGVSHMTIRRDVSKLEEQGLLVSVSGGVRAVSRLAAEPSHLVKSTLQSEEKQAIGALAASHIAKN
SCIYLDAGTTTLALARAILDRNDLQVVTNDFEITQLLIDASQCGVIHTGGTLCRENRSCVGESAARTLRHLAIDTAFISA
SGWDSRGIFTPDENKVTVKETVSQVSARSILLCDSSKYNQVATFMALPLTRFTTIITDRHLSDAAASHIARHACEVLRAG
>Mature_240_residues
MEQRGAVSINELTEILGVSHMTIRRDVSKLEEQGLLVSVSGGVRAVSRLAAEPSHLVKSTLQSEEKQAIGALAASHIAKN
SCIYLDAGTTTLALARAILDRNDLQVVTNDFEITQLLIDASQCGVIHTGGTLCRENRSCVGESAARTLRHLAIDTAFISA
SGWDSRGIFTPDENKVTVKETVSQVSARSILLCDSSKYNQVATFMALPLTRFTTIITDRHLSDAAASHIARHACEVLRAG

Specific function: Unknown

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI226510968, Length=237, Percent_Identity=56.1181434599156, Blast_Score=266, Evalue=8e-73,
Organism=Escherichia coli, GI1789519, Length=243, Percent_Identity=29.6296296296296, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1789829, Length=219, Percent_Identity=31.5068493150685, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI87082344, Length=224, Percent_Identity=33.4821428571429, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1788069, Length=215, Percent_Identity=29.3023255813954, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1787540, Length=228, Percent_Identity=28.5087719298246, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1789059, Length=242, Percent_Identity=26.0330578512397, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1789170, Length=213, Percent_Identity=34.2723004694836, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1790753, Length=251, Percent_Identity=29.4820717131474, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1790635, Length=240, Percent_Identity=23.75, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787063, Length=208, Percent_Identity=28.3653846153846, Blast_Score=68, Evalue=7e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 25799; Mature: 25799

Theoretical pI: Translated: 6.93; Mature: 6.93

Prosite motif: PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQRGAVSINELTEILGVSHMTIRRDVSKLEEQGLLVSVSGGVRAVSRLAAEPSHLVKST
CCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHCCHHHHHHHH
LQSEEKQAIGALAASHIAKNSCIYLDAGTTTLALARAILDRNDLQVVTNDFEITQLLIDA
HHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHH
SQCGVIHTGGTLCRENRSCVGESAARTLRHLAIDTAFISASGWDSRGIFTPDENKVTVKE
HHCCEEECCCHHHHCCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCEEHHH
TVSQVSARSILLCDSSKYNQVATFMALPLTRFTTIITDRHLSDAAASHIARHACEVLRAG
HHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MEQRGAVSINELTEILGVSHMTIRRDVSKLEEQGLLVSVSGGVRAVSRLAAEPSHLVKST
CCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHCCHHHHHHHH
LQSEEKQAIGALAASHIAKNSCIYLDAGTTTLALARAILDRNDLQVVTNDFEITQLLIDA
HHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHH
SQCGVIHTGGTLCRENRSCVGESAARTLRHLAIDTAFISASGWDSRGIFTPDENKVTVKE
HHCCEEECCCHHHHCCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCEEHHH
TVSQVSARSILLCDSSKYNQVATFMALPLTRFTTIITDRHLSDAAASHIARHACEVLRAG
HHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]