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The map label for this gene is ydgF

Identifier: 152970117

GI number: 152970117

Start: 1743439

End: 1743801

Strand: Direct

Name: ydgF

Synonym: KPN_01565

Alternate gene names: 152970117

Gene position: 1743439-1743801 (Clockwise)

Preceding gene: 152970109

Following gene: 152970118

Centisome position: 32.8

GC content: 47.11

Gene sequence:

>363_bases
ATGTTTTATTGGATTTTATTAGCTTTAGCAATTATTGCTGAAATTACCGGCACCTTGTCTATGAAATGGGCAAGCGTGAG
CGGCGGGCACACCGGCTTTATTTTAATGCTGGCCATGATTGCCCTGTCATATATTTTTCTTGCCTTTGCGGTTAAAAAGA
TTGCCCTCGGTGTGGCCTATGCGTTGTGGGAAGGGATCGGTATTTTACTGATTACCCTGTTCAGCGTGCTGCTGTTTGAT
GAGAGTCTGTCCCTGCTGAAAATAGCCGGCTTGACCACCCTGGTGATAGGGATCGTCTTAATTAAGTCCGGCACCCAGAA
AAAAGCGTCTTCCAAGCAGGAGGTGGCCCATGCAGCAGTTTGA

Upstream 100 bases:

>100_bases
AGCTGGCGCCAAGCGCACAGCGATATCTACGTCAGAAATTTTCCTGTTTACGTCTCGCGTAAACGGTAATGGATTATATT
CTCAAGCAGGAGAAGGGATC

Downstream 100 bases:

>100_bases
GTGGATCCACGCCGCCTGGCTGGCAATCGCCATTGTGCTGGAAATTATTGCCAACGTCTTTTTGAAGTTTTCCGACGGCT
TCCGCCGCAAGATCTACGGC

Product: multidrug efflux system protein MdtJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 120; Mature: 120

Protein sequence:

>120_residues
MFYWILLALAIIAEITGTLSMKWASVSGGHTGFILMLAMIALSYIFLAFAVKKIALGVAYALWEGIGILLITLFSVLLFD
ESLSLLKIAGLTTLVIGIVLIKSGTQKKASSKQEVAHAAV

Sequences:

>Translated_120_residues
MFYWILLALAIIAEITGTLSMKWASVSGGHTGFILMLAMIALSYIFLAFAVKKIALGVAYALWEGIGILLITLFSVLLFD
ESLSLLKIAGLTTLVIGIVLIKSGTQKKASSKQEVAHAAV
>Mature_120_residues
MFYWILLALAIIAEITGTLSMKWASVSGGHTGFILMLAMIALSYIFLAFAVKKIALGVAYALWEGIGILLITLFSVLLFD
ESLSLLKIAGLTTLVIGIVLIKSGTQKKASSKQEVAHAAV

Specific function: Catalyzes the excretion of spermidine

COG id: COG2076

COG function: function code P; Membrane transporters of cations and cationic drugs

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small multidrug resistance (SMR) protein family. MdtJ subfamily

Homologues:

Organism=Escherichia coli, GI1787884, Length=118, Percent_Identity=82.2033898305085, Blast_Score=181, Evalue=1e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): MDTJ_KLEP7 (A6T8S5)

Other databases:

- EMBL:   CP000647
- RefSeq:   YP_001335226.1
- STRING:   A6T8S5
- GeneID:   5342798
- GenomeReviews:   CP000647_GR
- KEGG:   kpn:KPN_01565
- eggNOG:   COG2076
- HOGENOM:   HBG740972
- OMA:   AFWEGLG
- ProtClustDB:   PRK10452
- GO:   GO:0006810
- HAMAP:   MF_01598
- InterPro:   IPR000390

Pfam domain/function: PF00893 Multi_Drug_Res

EC number: NA

Molecular weight: Translated: 12815; Mature: 12815

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x152aafe4)-; HASH(0x15a504f0)-; HASH(0x15743698)-; HASH(0x15a9e55c)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFYWILLALAIIAEITGTLSMKWASVSGGHTGFILMLAMIALSYIFLAFAVKKIALGVAY
CHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALWEGIGILLITLFSVLLFDESLSLLKIAGLTTLVIGIVLIKSGTQKKASSKQEVAHAAV
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCH
>Mature Secondary Structure
MFYWILLALAIIAEITGTLSMKWASVSGGHTGFILMLAMIALSYIFLAFAVKKIALGVAY
CHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALWEGIGILLITLFSVLLFDESLSLLKIAGLTTLVIGIVLIKSGTQKKASSKQEVAHAAV
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA