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The map label for this gene is abgR [H]

Identifier: 152970087

GI number: 152970087

Start: 1706993

End: 1707901

Strand: Direct

Name: abgR [H]

Synonym: KPN_01535

Alternate gene names: 152970087

Gene position: 1706993-1707901 (Clockwise)

Preceding gene: 152970080

Following gene: 152970088

Centisome position: 32.12

GC content: 59.74

Gene sequence:

>909_bases
ATGGCATTTCAGATTAAATTTCATCAAATTCGCGCCTTCGTCGAAGTAGCCCGGGAAGGCAGTATCCGTGGCGCCAGCCG
GGCGCTGGCGGTCTCGCAGCCGGCGCTGACCAAAGCGATTAAAGAGCTGGAGGAGGGGCTTTCCGCCCAGCTGTTCGTCC
GCCGCAGCCAGGGGGTGGCGTTAACCGACAATGGCGAAAGTTTTTATCAACATGCGAGCCTGATCCTTGAGGAGCTGCGG
GCGGCGCAGGATGAACTGCTGCAGCGCCAGGGGGAACAGGCCGGGCAAATTAATATTGGCCTTGGCGCCAGCGTCGCCCG
GTCGCTGATGCCGTCGGTGATCTGCCGCTTTCATCAGCAGCATCCGCAGGTGAAGGTGCGGATCATGGAGGGTCAGCTGC
TGGCGATGATTAATGAGCTGCGCCAGGGGGAGCTGGATTTCACCATTAATACCTATTACCCCGGGCCGTACGACCATGAG
TTCAGCTTTGAGAAACTGTTTGAGAAACCGTTCGCGGTGTTCGCCCGCGCGGGCCATCCGGCGGCGCAGGCCACCTCGCT
GGGGGAGTTGATGGATCACCACTGGACCATGCCGACGCCGCGCGGCAGCTACTTCAAGCAGCTGCAGGAGCGCTTCGAAC
AGCTGGGACGGGAGCCAAAGGTGGGGATCGTCTGCGAAACGTTCTCATCCTGCATCAGCCTGGTGGTGAAAAGTGATTTT
CTCAGCATCCTGCCGGTGGAGCTGGGCAACGACCCGCTGATGGCCGACAAACTGGTGATGATCCCCATCCGTGAAGTGTT
ACCCACCGCCACCTATTATCTGATCCAGCGGCGCGATACCCGGCAAACGCCGCTCACGGCGTCGTTAATCACCCTGTTCC
GCCGCCAGAGCCGACAATTGTTTCCTTAA

Upstream 100 bases:

>100_bases
ACGCGCTACAGGCCTTAACACCCTTAACCTGCCACAGCCTGATGGATTACAGTAGATGTCATTTTCTTCTGTCTGATAAG
CAACGGTTATCACTAAAAGC

Downstream 100 bases:

>100_bases
TCGTCCGTCGCGCTCACTTTGCCAGCGAACGCGGCTAAACGCGTTGAGAGGGGAGCGCGAGGCGGCTATAGTAGCTGGCG
ACAGCCGCTGGAGGAGAGCC

Product: putative DNA-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 301

Protein sequence:

>302_residues
MAFQIKFHQIRAFVEVAREGSIRGASRALAVSQPALTKAIKELEEGLSAQLFVRRSQGVALTDNGESFYQHASLILEELR
AAQDELLQRQGEQAGQINIGLGASVARSLMPSVICRFHQQHPQVKVRIMEGQLLAMINELRQGELDFTINTYYPGPYDHE
FSFEKLFEKPFAVFARAGHPAAQATSLGELMDHHWTMPTPRGSYFKQLQERFEQLGREPKVGIVCETFSSCISLVVKSDF
LSILPVELGNDPLMADKLVMIPIREVLPTATYYLIQRRDTRQTPLTASLITLFRRQSRQLFP

Sequences:

>Translated_302_residues
MAFQIKFHQIRAFVEVAREGSIRGASRALAVSQPALTKAIKELEEGLSAQLFVRRSQGVALTDNGESFYQHASLILEELR
AAQDELLQRQGEQAGQINIGLGASVARSLMPSVICRFHQQHPQVKVRIMEGQLLAMINELRQGELDFTINTYYPGPYDHE
FSFEKLFEKPFAVFARAGHPAAQATSLGELMDHHWTMPTPRGSYFKQLQERFEQLGREPKVGIVCETFSSCISLVVKSDF
LSILPVELGNDPLMADKLVMIPIREVLPTATYYLIQRRDTRQTPLTASLITLFRRQSRQLFP
>Mature_301_residues
AFQIKFHQIRAFVEVAREGSIRGASRALAVSQPALTKAIKELEEGLSAQLFVRRSQGVALTDNGESFYQHASLILEELRA
AQDELLQRQGEQAGQINIGLGASVARSLMPSVICRFHQQHPQVKVRIMEGQLLAMINELRQGELDFTINTYYPGPYDHEF
SFEKLFEKPFAVFARAGHPAAQATSLGELMDHHWTMPTPRGSYFKQLQERFEQLGREPKVGIVCETFSSCISLVVKSDFL
SILPVELGNDPLMADKLVMIPIREVLPTATYYLIQRRDTRQTPLTASLITLFRRQSRQLFP

Specific function: Could be the regulator of the abg operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787601, Length=296, Percent_Identity=74.6621621621622, Blast_Score=469, Evalue=1e-133,
Organism=Escherichia coli, GI1789506, Length=292, Percent_Identity=26.027397260274, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI87081904, Length=265, Percent_Identity=29.0566037735849, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI157672245, Length=277, Percent_Identity=26.3537906137184, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI145693105, Length=306, Percent_Identity=26.4705882352941, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1788887, Length=251, Percent_Identity=27.4900398406374, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1788481, Length=294, Percent_Identity=28.2312925170068, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1790399, Length=180, Percent_Identity=28.3333333333333, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1788748, Length=172, Percent_Identity=27.906976744186, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1787530, Length=280, Percent_Identity=22.1428571428571, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790208, Length=145, Percent_Identity=26.8965517241379, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI2367136, Length=222, Percent_Identity=27.9279279279279, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788297, Length=146, Percent_Identity=27.3972602739726, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1789440, Length=150, Percent_Identity=28.6666666666667, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787128, Length=131, Percent_Identity=28.2442748091603, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787879, Length=291, Percent_Identity=25.4295532646048, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI87082024, Length=167, Percent_Identity=26.3473053892216, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1787806, Length=284, Percent_Identity=20.4225352112676, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34133; Mature: 34002

Theoretical pI: Translated: 8.11; Mature: 8.11

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFQIKFHQIRAFVEVAREGSIRGASRALAVSQPALTKAIKELEEGLSAQLFVRRSQGVA
CEEEEHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHCCCCEEEEEECCCEE
LTDNGESFYQHASLILEELRAAQDELLQRQGEQAGQINIGLGASVARSLMPSVICRFHQQ
EECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHC
HPQVKVRIMEGQLLAMINELRQGELDFTINTYYPGPYDHEFSFEKLFEKPFAVFARAGHP
CCCEEEEEECCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCC
AAQATSLGELMDHHWTMPTPRGSYFKQLQERFEQLGREPKVGIVCETFSSCISLVVKSDF
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHH
LSILPVELGNDPLMADKLVMIPIREVLPTATYYLIQRRDTRQTPLTASLITLFRRQSRQL
HHHCCHHCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCC
FP
CC
>Mature Secondary Structure 
AFQIKFHQIRAFVEVAREGSIRGASRALAVSQPALTKAIKELEEGLSAQLFVRRSQGVA
EEEEHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHCCCCEEEEEECCCEE
LTDNGESFYQHASLILEELRAAQDELLQRQGEQAGQINIGLGASVARSLMPSVICRFHQQ
EECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHC
HPQVKVRIMEGQLLAMINELRQGELDFTINTYYPGPYDHEFSFEKLFEKPFAVFARAGHP
CCCEEEEEECCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCC
AAQATSLGELMDHHWTMPTPRGSYFKQLQERFEQLGREPKVGIVCETFSSCISLVVKSDF
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHH
LSILPVELGNDPLMADKLVMIPIREVLPTATYYLIQRRDTRQTPLTASLITLFRRQSRQL
HHHCCHHCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCC
FP
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9829935 [H]