Click here to switch to the map view.

The map label for this gene is yjgJ [H]

Identifier: 152969904

GI number: 152969904

Start: 1517692

End: 1518285

Strand: Direct

Name: yjgJ [H]

Synonym: KPN_01351

Alternate gene names: 152969904

Gene position: 1517692-1518285 (Clockwise)

Preceding gene: 152969902

Following gene: 152969906

Centisome position: 28.55

GC content: 65.49

Gene sequence:

>594_bases
GTGACCACTACAAAACCAGGGCGCACTCCGGGACGTCCCCGCCAGTTTGATGCGGAACAGGCCATTGAAACGGCGCAACG
CCTCTTCCACGCGCGAGGCTACGACGCGGTGAGCGTGGCCGATCTGACCCAGGCTTTCGGCATCAACCCCCCGAGCTTTT
ATGCCGCTTTTGGCAGCAAGCTCGGGCTGTATACCCGCGTCCTGCAGCGCTACAGCCAGACCGGGGCCATTCCCATCGAT
GCCCTGCTGCGAGACGACCAGCCGGTGGCGGCGTCGCTCATCGCCGTACTGCAGGAGGCGGCTCGCCGCTATGTGGCCGA
TCCGGCCGCCGCCGGTTGCCTGGTGCTGGAGGGGGTACATTGTCAGGATGCTGATGCCCGGGTGGCGGCAGGCGAATGGC
ATGCTGCGGCAAGAGCCAAAATCCAGCAGTATATCGCCCGCCATCGCCCGCAGGACGCGCTGCGGGTGACTGACTATATG
GATACGCTGATGCTTGGCCTGTCGGCGAAAGCGCGGGAAGGGGATAGTCTGCCGCGTCTTCTGGAGACCGTGCGGCTGGC
AGGCCTGGCGCTGGAGCGCATCCTGCCAGCCTGA

Upstream 100 bases:

>100_bases
CACTGATTTGTTGTGAAACGCTGTCATATCCCACACCTCATGATATTGTAGTGATGATTACAATATGCTGCGGCTAAACA
GGCTGTCAAGGATTAATTTA

Downstream 100 bases:

>100_bases
GTCGTCAGATGGTTTGTCCGCCCGACACCTCGATCCGCTGGGCGGTCACCCAGCGGTTATCGTCGCGTAGCAGGCTGGCG
ATCATCGGCCCAATATCCTC

Product: putative regulatory protein TetR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 196

Protein sequence:

>197_residues
MTTTKPGRTPGRPRQFDAEQAIETAQRLFHARGYDAVSVADLTQAFGINPPSFYAAFGSKLGLYTRVLQRYSQTGAIPID
ALLRDDQPVAASLIAVLQEAARRYVADPAAAGCLVLEGVHCQDADARVAAGEWHAAARAKIQQYIARHRPQDALRVTDYM
DTLMLGLSAKAREGDSLPRLLETVRLAGLALERILPA

Sequences:

>Translated_197_residues
MTTTKPGRTPGRPRQFDAEQAIETAQRLFHARGYDAVSVADLTQAFGINPPSFYAAFGSKLGLYTRVLQRYSQTGAIPID
ALLRDDQPVAASLIAVLQEAARRYVADPAAAGCLVLEGVHCQDADARVAAGEWHAAARAKIQQYIARHRPQDALRVTDYM
DTLMLGLSAKAREGDSLPRLLETVRLAGLALERILPA
>Mature_196_residues
TTTKPGRTPGRPRQFDAEQAIETAQRLFHARGYDAVSVADLTQAFGINPPSFYAAFGSKLGLYTRVLQRYSQTGAIPIDA
LLRDDQPVAASLIAVLQEAARRYVADPAAAGCLVLEGVHCQDADARVAAGEWHAAARAKIQQYIARHRPQDALRVTDYMD
TLMLGLSAKAREGDSLPRLLETVRLAGLALERILPA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082397, Length=195, Percent_Identity=55.8974358974359, Blast_Score=216, Evalue=8e-58,
Organism=Escherichia coli, GI87081833, Length=200, Percent_Identity=29.5, Blast_Score=91, Evalue=5e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 21397; Mature: 21265

Theoretical pI: Translated: 8.67; Mature: 8.67

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTTKPGRTPGRPRQFDAEQAIETAQRLFHARGYDAVSVADLTQAFGINPPSFYAAFGSK
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
LGLYTRVLQRYSQTGAIPIDALLRDDQPVAASLIAVLQEAARRYVADPAAAGCLVLEGVH
HHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHCCHHHCCCCC
CQDADARVAAGEWHAAARAKIQQYIARHRPQDALRVTDYMDTLMLGLSAKAREGDSLPRL
CCCCCCEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
LETVRLAGLALERILPA
HHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TTTKPGRTPGRPRQFDAEQAIETAQRLFHARGYDAVSVADLTQAFGINPPSFYAAFGSK
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
LGLYTRVLQRYSQTGAIPIDALLRDDQPVAASLIAVLQEAARRYVADPAAAGCLVLEGVH
HHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHCCHHHCCCCC
CQDADARVAAGEWHAAARAKIQQYIARHRPQDALRVTDYMDTLMLGLSAKAREGDSLPRL
CCCCCCEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
LETVRLAGLALERILPA
HHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]