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The map label for this gene is cydA [H]

Identifier: 152969300

GI number: 152969300

Start: 828824

End: 830395

Strand: Direct

Name: cydA [H]

Synonym: KPN_00736

Alternate gene names: 152969300

Gene position: 828824-830395 (Clockwise)

Preceding gene: 152969299

Following gene: 152969301

Centisome position: 15.59

GC content: 56.23

Gene sequence:

>1572_bases
ATGATGTTAGATATAGTCGAACTGTCGCGCTTACAGTTTGCCTTGACCGCGATGTACCACTTCCTGTTTGTGCCGCTAAC
GCTCGGTATGGCGTTCCTGCTGGCCATCATGGAAACGGTCTACGTCCTTTCCGGCAAACAGATTTATAAAGATATGACCA
AATTCTGGGGCAAGTTGTTTGGTATCAACTTCGCGCTGGGTGTGGCGACCGGTCTGACCATGGAGTTCCAGTTCGGGACT
AACTGGTCGTATTACTCACACTACGTGGGCGATATCTTTGGTGCGCCGCTGGCCATTGAAGGTCTGATGGCCTTCTTCCT
CGAATCCACCTTTGTAGGTCTGTTCTTCTTCGGTTGGGATCGTCTGGGCAAAGTTCAGCACATGGCCGTCACCTGGCTGG
TTGCGCTGGGTTCCAACCTCTCCGCGCTGTGGATCCTTGTCGCCAACGGCTGGATGCAGAACCCTATCGCATCGGACTTC
AACTTCGAAACCATGCGTATGGAGATGGTCAGCTTCTCTGAACTGGTGCTCAACCCGGTCGCCCAGGTGAAATTCGTTCA
CACTGTGGCGTCGGGCTATGTCACCGGCGCGATGTTCATCCTGGCGATTAGCTCCTGGTACATGCTGAAAGGTCGCGACT
TCGCCTTTGCCAAGCGCTCCTTTGCCATCGCAGCCAGCTTCGGTATGGCGGCGATCCTCTCCGTTATTGTGCTGGGTGAC
GAATCCGGTTACGAAATGGGTGACGTGCAGAAAACCAAACTGGCGGCTATCGAAGCAGAGTGGGAAACCCAGCCTGCGCC
GGCGGCCTTCACCCTGTTTGGTATTCCCGATCAGAATGCGCAGACCAACCACTTTGCGATCCAGATCCCCTACGCGCTGG
GCATCATTGCTACCCGCTCGGTGGACAAGCCGGTTATCGGCCTCAAGGATCTGATGGTTCAGCACGAAGAGCGTATCCGT
AACGGCATGAAAGCCTACGCGCTGCTGGAACAGCTGCGCGCCGGTTCAACCGATCAGGCCGTGCGTGACCAGTTCAATAA
CGTGAAGAAGGACCTCGGTTATGGCCTGCTGTTGAAGCGCTATACCCCGAACGTCGCTGACGCCACGGAAGAGCAGATCG
CCAAAGCGACCAAAGACTCCATTCCAAGCGTCGCACCGCTGTACTTCGCCTTCCGTATCATGGTGGCGTGCGGCATCCTG
ATGCTGCTGATTATAGGCGCCTCCTTCTGGAGCGTGATCCGTAACCGCATCGGCGAGAAAAAATGGCTGCTGCGCGCCGC
ATTCTACGGCCTGCCGCTGCCGTGGATTGCCGTGGAGTCGGGCTGGTTTGTTGCCGAATACGGCCGTCAGCCGTGGGCGA
TTGGTGAGGTCCTGCCGACGGCGGTGGCTAACTCATCATTGACCGCGGGCGACCTGATCTTCTCAATGTTGCTGATCTGT
GGTCTGTACACGCTGTTCCTGGTGGCTGAACTGTTCCTGATGTTCAAGTTTGCCCGCAAAGGACCTAGCAGCCTGAAAAC
CGGCCGCTATCACTTTGAACAGTCCTCTGCGGCTATTCAGTCGGCACGCTAA

Upstream 100 bases:

>100_bases
CTGCTGTGGACGGGCGACAAATAAATTTGTATTGGGGCATGCGTATGAGCCAGAGCTTCTCGGTTCATTTTCGGAGTCTT
CATGCGATGAGCAAGGAGTC

Downstream 100 bases:

>100_bases
GACAGGAGTCGTCAAATGATCGATTATGAAGTATTGCGTTTTATCTGGTGGCTGCTGATTGGCATTCTGCTGATTGGTTT
TGCCGTCGCCGACGGGTTCG

Product: cytochrome d terminal oxidase, polypeptide subunit I

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit I; Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 523; Mature: 523

Protein sequence:

>523_residues
MMLDIVELSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLSGKQIYKDMTKFWGKLFGINFALGVATGLTMEFQFGT
NWSYYSHYVGDIFGAPLAIEGLMAFFLESTFVGLFFFGWDRLGKVQHMAVTWLVALGSNLSALWILVANGWMQNPIASDF
NFETMRMEMVSFSELVLNPVAQVKFVHTVASGYVTGAMFILAISSWYMLKGRDFAFAKRSFAIAASFGMAAILSVIVLGD
ESGYEMGDVQKTKLAAIEAEWETQPAPAAFTLFGIPDQNAQTNHFAIQIPYALGIIATRSVDKPVIGLKDLMVQHEERIR
NGMKAYALLEQLRAGSTDQAVRDQFNNVKKDLGYGLLLKRYTPNVADATEEQIAKATKDSIPSVAPLYFAFRIMVACGIL
MLLIIGASFWSVIRNRIGEKKWLLRAAFYGLPLPWIAVESGWFVAEYGRQPWAIGEVLPTAVANSSLTAGDLIFSMLLIC
GLYTLFLVAELFLMFKFARKGPSSLKTGRYHFEQSSAAIQSAR

Sequences:

>Translated_523_residues
MMLDIVELSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLSGKQIYKDMTKFWGKLFGINFALGVATGLTMEFQFGT
NWSYYSHYVGDIFGAPLAIEGLMAFFLESTFVGLFFFGWDRLGKVQHMAVTWLVALGSNLSALWILVANGWMQNPIASDF
NFETMRMEMVSFSELVLNPVAQVKFVHTVASGYVTGAMFILAISSWYMLKGRDFAFAKRSFAIAASFGMAAILSVIVLGD
ESGYEMGDVQKTKLAAIEAEWETQPAPAAFTLFGIPDQNAQTNHFAIQIPYALGIIATRSVDKPVIGLKDLMVQHEERIR
NGMKAYALLEQLRAGSTDQAVRDQFNNVKKDLGYGLLLKRYTPNVADATEEQIAKATKDSIPSVAPLYFAFRIMVACGIL
MLLIIGASFWSVIRNRIGEKKWLLRAAFYGLPLPWIAVESGWFVAEYGRQPWAIGEVLPTAVANSSLTAGDLIFSMLLIC
GLYTLFLVAELFLMFKFARKGPSSLKTGRYHFEQSSAAIQSAR
>Mature_523_residues
MMLDIVELSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLSGKQIYKDMTKFWGKLFGINFALGVATGLTMEFQFGT
NWSYYSHYVGDIFGAPLAIEGLMAFFLESTFVGLFFFGWDRLGKVQHMAVTWLVALGSNLSALWILVANGWMQNPIASDF
NFETMRMEMVSFSELVLNPVAQVKFVHTVASGYVTGAMFILAISSWYMLKGRDFAFAKRSFAIAASFGMAAILSVIVLGD
ESGYEMGDVQKTKLAAIEAEWETQPAPAAFTLFGIPDQNAQTNHFAIQIPYALGIIATRSVDKPVIGLKDLMVQHEERIR
NGMKAYALLEQLRAGSTDQAVRDQFNNVKKDLGYGLLLKRYTPNVADATEEQIAKATKDSIPSVAPLYFAFRIMVACGIL
MLLIIGASFWSVIRNRIGEKKWLLRAAFYGLPLPWIAVESGWFVAEYGRQPWAIGEVLPTAVANSSLTAGDLIFSMLLIC
GLYTLFLVAELFLMFKFARKGPSSLKTGRYHFEQSSAAIQSAR

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=522, Percent_Identity=93.8697318007663, Blast_Score=1009, Evalue=0.0,
Organism=Escherichia coli, GI1787212, Length=506, Percent_Identity=61.0671936758893, Blast_Score=655, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 58183; Mature: 58183

Theoretical pI: Translated: 8.16; Mature: 8.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMLDIVELSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLSGKQIYKDMTKFWGKLF
CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
GINFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEGLMAFFLESTFVGLFFFGWD
CCHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
RLGKVQHMAVTWLVALGSNLSALWILVANGWMQNPIASDFNFETMRMEMVSFSELVLNPV
HHCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
AQVKFVHTVASGYVTGAMFILAISSWYMLKGRDFAFAKRSFAIAASFGMAAILSVIVLGD
HHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHEECC
ESGYEMGDVQKTKLAAIEAEWETQPAPAAFTLFGIPDQNAQTNHFAIQIPYALGIIATRS
CCCCCCCCCCHHHHHEEEECCCCCCCCCEEEEEECCCCCCCCCEEEEEECHHHHHHHCCC
VDKPVIGLKDLMVQHEERIRNGMKAYALLEQLRAGSTDQAVRDQFNNVKKDLGYGLLLKR
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHEEHH
YTPNVADATEEQIAKATKDSIPSVAPLYFAFRIMVACGILMLLIIGASFWSVIRNRIGEK
CCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
KWLLRAAFYGLPLPWIAVESGWFVAEYGRQPWAIGEVLPTAVANSSLTAGDLIFSMLLIC
HHHHHHHHHCCCCCCEEEECCEEEEECCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHH
GLYTLFLVAELFLMFKFARKGPSSLKTGRYHFEQSSAAIQSAR
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHCCC
>Mature Secondary Structure
MMLDIVELSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLSGKQIYKDMTKFWGKLF
CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
GINFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEGLMAFFLESTFVGLFFFGWD
CCHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
RLGKVQHMAVTWLVALGSNLSALWILVANGWMQNPIASDFNFETMRMEMVSFSELVLNPV
HHCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
AQVKFVHTVASGYVTGAMFILAISSWYMLKGRDFAFAKRSFAIAASFGMAAILSVIVLGD
HHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHEECC
ESGYEMGDVQKTKLAAIEAEWETQPAPAAFTLFGIPDQNAQTNHFAIQIPYALGIIATRS
CCCCCCCCCCHHHHHEEEECCCCCCCCCEEEEEECCCCCCCCCEEEEEECHHHHHHHCCC
VDKPVIGLKDLMVQHEERIRNGMKAYALLEQLRAGSTDQAVRDQFNNVKKDLGYGLLLKR
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHEEHH
YTPNVADATEEQIAKATKDSIPSVAPLYFAFRIMVACGILMLLIIGASFWSVIRNRIGEK
CCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
KWLLRAAFYGLPLPWIAVESGWFVAEYGRQPWAIGEVLPTAVANSSLTAGDLIFSMLLIC
HHHHHHHHHCCCCCCEEEECCEEEEECCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHH
GLYTLFLVAELFLMFKFARKGPSSLKTGRYHFEQSSAAIQSAR
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]