Click here to switch to the map view.

The map label for this gene is cspE [H]

Identifier: 152969227

GI number: 152969227

Start: 745511

End: 745720

Strand: Direct

Name: cspE [H]

Synonym: KPN_00656

Alternate gene names: 152969227

Gene position: 745511-745720 (Clockwise)

Preceding gene: 152969226

Following gene: 152969229

Centisome position: 14.03

GC content: 44.76

Gene sequence:

>210_bases
ATGTCTAAGATTAAAGGTAACGTTAAGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGATGGCAGCAA
AGATGTATTCGTACACTTCTCTGCAATCCAGTCCAACGGTTTCAAAACTCTGGCTGAAGGTCAGCGCGTAGAGTTCGAAA
TCACTAACGGTGCCAAAGGCCCTTCTGCTGCAAACGTCATCGCTCTGTAA

Upstream 100 bases:

>100_bases
TCACTTTTTAGCAAAGTTGCACTGGACAAAAGGTACCACAATTGGTGTACTGATACCCGACACAGCATTAGTGTCGATTT
TTCATATAAAGGTAATTTTG

Downstream 100 bases:

>100_bases
GCAACGCGTCAGTAGAATATAAAAACCCGCTAATAAGCGGGTTTTTTTTTGCCTGTCTCCTTCGCTTTTAGCGGCTGGCC
GCCTGCGAGAAAAGCCAGAA

Product: cold shock protein CspE

Products: NA

Alternate protein names: CSP-E [H]

Number of amino acids: Translated: 69; Mature: 68

Protein sequence:

>69_residues
MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQSNGFKTLAEGQRVEFEITNGAKGPSAANVIAL

Sequences:

>Translated_69_residues
MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQSNGFKTLAEGQRVEFEITNGAKGPSAANVIAL
>Mature_68_residues
SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQSNGFKTLAEGQRVEFEITNGAKGPSAANVIAL

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Homo sapiens, GI224586882, Length=70, Percent_Identity=44.2857142857143, Blast_Score=63, Evalue=5e-11,
Organism=Homo sapiens, GI224586884, Length=70, Percent_Identity=44.2857142857143, Blast_Score=63, Evalue=5e-11,
Organism=Homo sapiens, GI34098946, Length=70, Percent_Identity=44.2857142857143, Blast_Score=63, Evalue=6e-11,
Organism=Escherichia coli, GI1786841, Length=69, Percent_Identity=98.5507246376812, Blast_Score=139, Evalue=5e-35,
Organism=Escherichia coli, GI1788126, Length=69, Percent_Identity=82.6086956521739, Blast_Score=118, Evalue=6e-29,
Organism=Escherichia coli, GI1787834, Length=68, Percent_Identity=73.5294117647059, Blast_Score=103, Evalue=2e-24,
Organism=Escherichia coli, GI2367114, Length=68, Percent_Identity=69.1176470588235, Blast_Score=102, Evalue=4e-24,
Organism=Escherichia coli, GI1789979, Length=67, Percent_Identity=70.1492537313433, Blast_Score=102, Evalue=6e-24,
Organism=Escherichia coli, GI1787839, Length=66, Percent_Identity=69.6969696969697, Blast_Score=98, Evalue=9e-23,
Organism=Escherichia coli, GI1787107, Length=65, Percent_Identity=50.7692307692308, Blast_Score=79, Evalue=4e-17,
Organism=Escherichia coli, GI2367112, Length=64, Percent_Identity=50, Blast_Score=63, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24658520, Length=61, Percent_Identity=50.8196721311475, Blast_Score=71, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7449; Mature: 7318

Theoretical pI: Translated: 9.24; Mature: 9.24

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQSNGFKTLAEGQRVEFEITNGAKG
CCCCCCCEEEEECCCCEEEECCCCCCCEEEEEEEEECCCCCEECCCCCEEEEEECCCCCC
PSAANVIAL
CCCCEEEEC
>Mature Secondary Structure 
SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQSNGFKTLAEGQRVEFEITNGAKG
CCCCCCEEEEECCCCEEEECCCCCCCEEEEEEEEECCCCCEECCCCCEEEEEECCCCCC
PSAANVIAL
CCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10993077 [H]