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The map label for this gene is yraN [C]

Identifier: 150398729

GI number: 150398729

Start: 3751192

End: 3751560

Strand: Direct

Name: yraN [C]

Synonym: Smed_3545

Alternate gene names: 150398729

Gene position: 3751192-3751560 (Clockwise)

Preceding gene: 150398728

Following gene: 150398730

Centisome position: 99.19

GC content: 62.6

Gene sequence:

>369_bases
ATGAAGGCTGAGCGATCGGACGACCTCAAGCTGAAGGCTCTGAAGCGGGGCCATCTGGCCGAATACCGCGCGGCGCTCTG
CCTGATCCTGAAAGGTTACCGCATCGTTGCGATGCGCTATCGCACCAGGCTGGGTGAAATCGACATCATCGCCCGGCGCG
GGGATCTCATCGCCTGCGTCGAGGTGAAGGCCCGGCGGAGTTTTGACGATGCGATCTTCGCCGTTTCCAGCACTGCGCAA
CGACGCATCCGTGCCGCAAGCGAGGTTTGGCTGTCGCGTCAGGGCGACTTCCATCGCCTGTCGCTGCGCTACGATATCGT
CGCCGTCATGCCCTGGCGATGGCCGCGGCATCTGACGGACGCTTTTTGA

Upstream 100 bases:

>100_bases
CGAGATCTGCCGATGGGCAAGGCAGCGACGGAGGCCGCGCATCGCACAGGACTTGCACGCAAGGCGCTTTACGACCGGCT
CCTCGAGCTCAAGGACAGCG

Downstream 100 bases:

>100_bases
TCGGCGGGAGCGGCAGGAGCCTTCTTGCCTAACCACGGTACGCATTCTACATCTTGCTGGCTTTTCTGCGTGCCGCCTTT
TCAGGAGTACAGGCGCAGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 122; Mature: 122

Protein sequence:

>122_residues
MKAERSDDLKLKALKRGHLAEYRAALCLILKGYRIVAMRYRTRLGEIDIIARRGDLIACVEVKARRSFDDAIFAVSSTAQ
RRIRAASEVWLSRQGDFHRLSLRYDIVAVMPWRWPRHLTDAF

Sequences:

>Translated_122_residues
MKAERSDDLKLKALKRGHLAEYRAALCLILKGYRIVAMRYRTRLGEIDIIARRGDLIACVEVKARRSFDDAIFAVSSTAQ
RRIRAASEVWLSRQGDFHRLSLRYDIVAVMPWRWPRHLTDAF
>Mature_122_residues
MKAERSDDLKLKALKRGHLAEYRAALCLILKGYRIVAMRYRTRLGEIDIIARRGDLIACVEVKARRSFDDAIFAVSSTAQ
RRIRAASEVWLSRQGDFHRLSLRYDIVAVMPWRWPRHLTDAF

Specific function: Unknown

COG id: COG0792

COG function: function code L; Predicted endonuclease distantly related to archaeal Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0102 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y3545_SINMW (A6UFD1)

Other databases:

- EMBL:   CP000738
- RefSeq:   YP_001329196.1
- ProteinModelPortal:   A6UFD1
- STRING:   A6UFD1
- GeneID:   5324433
- GenomeReviews:   CP000738_GR
- KEGG:   smd:Smed_3545
- eggNOG:   COG0792
- HOGENOM:   HBG710155
- OMA:   DIWLARQ
- ProtClustDB:   PRK12497
- BioCyc:   SMED366394:SMED_3545-MONOMER
- HAMAP:   MF_00048
- InterPro:   IPR011856
- InterPro:   IPR011335
- InterPro:   IPR003509
- Gene3D:   G3DSA:3.40.1350.10
- TIGRFAMs:   TIGR00252

Pfam domain/function: PF02021 UPF0102; SSF52980 Restrict_endonuc_II-like_core

EC number: NA

Molecular weight: Translated: 14217; Mature: 14217

Theoretical pI: Translated: 11.04; Mature: 11.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAERSDDLKLKALKRGHLAEYRAALCLILKGYRIVAMRYRTRLGEIDIIARRGDLIACV
CCCCCCCCCEEEHHHCCCHHHHHHHHHHHHCCCHHEEEHHHHCCCCEEEEEECCCEEEEE
EVKARRSFDDAIFAVSSTAQRRIRAASEVWLSRQGDFHRLSLRYDIVAVMPWRWPRHLTD
EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEEECCCCCCHHCC
AF
CC
>Mature Secondary Structure
MKAERSDDLKLKALKRGHLAEYRAALCLILKGYRIVAMRYRTRLGEIDIIARRGDLIACV
CCCCCCCCCEEEHHHCCCHHHHHHHHHHHHCCCHHEEEHHHHCCCCEEEEEECCCEEEEE
EVKARRSFDDAIFAVSSTAQRRIRAASEVWLSRQGDFHRLSLRYDIVAVMPWRWPRHLTD
EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEEECCCCCCHHCC
AF
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA