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The map label for this gene is rlpA [C]

Identifier: 150398715

GI number: 150398715

Start: 3740205

End: 3740579

Strand: Reverse

Name: rlpA [C]

Synonym: Smed_3531

Alternate gene names: 150398715

Gene position: 3740579-3740205 (Counterclockwise)

Preceding gene: 150398716

Following gene: 150398714

Centisome position: 98.91

GC content: 61.07

Gene sequence:

>375_bases
TTGACGCCAGCGAAAATCAAGACTGCTGCCGCGGCAGCACTATTCACCGCCGGGATCGGGTTTGTCTCGGCCTCCGATAG
TCAGGCAGCAGGCGCCGGTTGCGGCGGGGCATCCTGGTACGCGCTTTCCTCTAAAACGGCTTCCGGCGAAAGAATGAACG
CCGCGCACCTGACCGCCGCACACCGGAAACTGAAGTTCGGCACCAAGGTTCAGGTCACCAATAAACGCAACGGCAAGTCC
GTCATCGTCCGGATCAATGATCGCGGCCCGTTCATTCGCGGCCGGGTGATCGACCTCTCTAAGGCCGCCGCCTCGAAGAT
CGGCATGATCCGCTCGGGCACCGCCAGCATCTGTTACACGGTCGTGAATTCCTGA

Upstream 100 bases:

>100_bases
GGGACCTTAACGGTTGAGGCACGTTTTCGCCATCTTTGACCTCAATTAGCTCGATCAACAAAGGGAACTATTAAATTTTT
CGAACCGAAGGGGGCATCGC

Downstream 100 bases:

>100_bases
CGGCACCAGGTTCGCCCGGCGCATCTCGGCGAACCAGACTGCAAGAGCCAACCACCCTGCCACATAATGCGGTCGCCGTC
TTGCTCTTCGATGTCATCGC

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 124; Mature: 123

Protein sequence:

>124_residues
MTPAKIKTAAAAALFTAGIGFVSASDSQAAGAGCGGASWYALSSKTASGERMNAAHLTAAHRKLKFGTKVQVTNKRNGKS
VIVRINDRGPFIRGRVIDLSKAAASKIGMIRSGTASICYTVVNS

Sequences:

>Translated_124_residues
MTPAKIKTAAAAALFTAGIGFVSASDSQAAGAGCGGASWYALSSKTASGERMNAAHLTAAHRKLKFGTKVQVTNKRNGKS
VIVRINDRGPFIRGRVIDLSKAAASKIGMIRSGTASICYTVVNS
>Mature_123_residues
TPAKIKTAAAAALFTAGIGFVSASDSQAAGAGCGGASWYALSSKTASGERMNAAHLTAAHRKLKFGTKVQVTNKRNGKSV
IVRINDRGPFIRGRVIDLSKAAASKIGMIRSGTASICYTVVNS

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=65, Percent_Identity=49.2307692307692, Blast_Score=70, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997 [H]

Pfam domain/function: PF03330 DPBB_1 [H]

EC number: NA

Molecular weight: Translated: 12745; Mature: 12614

Theoretical pI: Translated: 11.50; Mature: 11.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPAKIKTAAAAALFTAGIGFVSASDSQAAGAGCGGASWYALSSKTASGERMNAAHLTAA
CCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHH
HRKLKFGTKVQVTNKRNGKSVIVRINDRGPFIRGRVIDLSKAAASKIGMIRSGTASICYT
HHEECCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEECCHHHHHHCCEEECCCCEEEEE
VVNS
EECC
>Mature Secondary Structure 
TPAKIKTAAAAALFTAGIGFVSASDSQAAGAGCGGASWYALSSKTASGERMNAAHLTAA
CCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHH
HRKLKFGTKVQVTNKRNGKSVIVRINDRGPFIRGRVIDLSKAAASKIGMIRSGTASICYT
HHEECCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEECCHHHHHHCCEEECCCCEEEEE
VVNS
EECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]