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The map label for this gene is msmE [H]

Identifier: 150398594

GI number: 150398594

Start: 3612265

End: 3613524

Strand: Reverse

Name: msmE [H]

Synonym: Smed_3405

Alternate gene names: 150398594

Gene position: 3613524-3612265 (Counterclockwise)

Preceding gene: 150398595

Following gene: 150398593

Centisome position: 95.55

GC content: 59.84

Gene sequence:

>1260_bases
ATGACCCGCACGACAATGAAAGGCCTACTGCTTGCATCGAGCATTCTCGGATCGGCCGGGCTAGTACAAGCCCAGGACGC
AACGCTGACGATCGAAAGCTGGCGCAATGACGACCTGGCGATCTGGCAGGAAAAGCTGATCCCGGCCTTCGAGGCGAAGA
ACCCCGGCATCAAGGTGGTGTTCGCTCCCTCGGCCCCGACTGAATACAATGCCGCGCTCAACGCCAAGCTCGACGCCGGT
TCCGCGGGCGACCTCATCACATGTCGGCCCTTCGATGCCTCACTCGAACTCTACAATAAGAAACATCTCGCCGACCTGAC
CGGTCTTTCCGGCATGGAGAACTTCTCGGACGTCGCCAAGTCCGCCTGGACGACAGACGACGGCAAGGCGACTTTCTGCG
TACCGATGGCCTCCGTCATCCACGGCTTCATCTACAACAAGGATGCCTTCGACCAGCTCGGGCTCGCCATTCCGGCGACG
GAAGAGGAATTCTTCGCGGTTCTCGAAAAGATCAAGGCGGACGGCAACTACATTCCAATGGCGATGGGCACCAAGGATCT
CTGGGAAGCCGCGACGATGGGCTACCAGAACATCGGCCCGACCTACTGGAAGGGCGAGGAAGGCCGTCTGGCTCTTCTGA
AAGGCCAGCAGAAGCTCACCGACGAACCATGGGTGGAACCTTTCCGCGTACTGGCAAAGTGGAAGGATTATCTCGGCGAC
GGTTTCGAGGCACAGACCTATCCGGACAGCCAGAACCTCTTCACGCTCGGCCGTGCGGCCATCTATCCGGCCGGCTCCTG
GGAAATCTCGGGCTTCAACACGCAGGCCGAATTCAAGATGGGGGCCTTTCCGCCGCCGGTGAAGAAGGCCGGCGACACCT
GCTACATTTCCGACCATAACGACATCGGCATCGGGCTCAATGCCAAGAGCAAGAATGCCGATGCCGCCAAAACCTTCCTC
ACCTGGGTCGCCTCGCCGGAATTCGCGGAAATCTATGCGAACGCCCTGCCCGGCTTCTTCAGCCTGAATTCGACGGCGGT
AAAGATGTCCGATCCGCTCGCCCAGGAATTCGTCTCCTGGCGGGAGAAATGCAAGCCGACCATCCGCTCGACCTATCAGA
TCCTGTCGCGCGGAACCCCGAACCTCGAGAATGAGACCTGGGTCATGTCGGCCAACGTCATCAACGGCACAGACACGCCG
GAGGCGGCCGCCAAGAAGCTCCAGGACGGGCTCGACAGCTGGTTCAAGCCGGTAAAATAA

Upstream 100 bases:

>100_bases
CGATCACAATCTGCGCCGGGCGATCGCCATCGTTCAGGCCTGAAGAATAGACTGCGCACCAGAACAGCGCGACCAAGCGC
TAAAAAAGGGGAGAAAATGC

Downstream 100 bases:

>100_bases
GGCCGAAAGCGGGCGCGCCTCCGTTTTGCGCGCCCCTCCCATGCGGAACGGTTTCCGCATGGGCAATGCCGTCATGAACG
TGTCGGGCATCCGGCTCCAA

Product: extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 419; Mature: 418

Protein sequence:

>419_residues
MTRTTMKGLLLASSILGSAGLVQAQDATLTIESWRNDDLAIWQEKLIPAFEAKNPGIKVVFAPSAPTEYNAALNAKLDAG
SAGDLITCRPFDASLELYNKKHLADLTGLSGMENFSDVAKSAWTTDDGKATFCVPMASVIHGFIYNKDAFDQLGLAIPAT
EEEFFAVLEKIKADGNYIPMAMGTKDLWEAATMGYQNIGPTYWKGEEGRLALLKGQQKLTDEPWVEPFRVLAKWKDYLGD
GFEAQTYPDSQNLFTLGRAAIYPAGSWEISGFNTQAEFKMGAFPPPVKKAGDTCYISDHNDIGIGLNAKSKNADAAKTFL
TWVASPEFAEIYANALPGFFSLNSTAVKMSDPLAQEFVSWREKCKPTIRSTYQILSRGTPNLENETWVMSANVINGTDTP
EAAAKKLQDGLDSWFKPVK

Sequences:

>Translated_419_residues
MTRTTMKGLLLASSILGSAGLVQAQDATLTIESWRNDDLAIWQEKLIPAFEAKNPGIKVVFAPSAPTEYNAALNAKLDAG
SAGDLITCRPFDASLELYNKKHLADLTGLSGMENFSDVAKSAWTTDDGKATFCVPMASVIHGFIYNKDAFDQLGLAIPAT
EEEFFAVLEKIKADGNYIPMAMGTKDLWEAATMGYQNIGPTYWKGEEGRLALLKGQQKLTDEPWVEPFRVLAKWKDYLGD
GFEAQTYPDSQNLFTLGRAAIYPAGSWEISGFNTQAEFKMGAFPPPVKKAGDTCYISDHNDIGIGLNAKSKNADAAKTFL
TWVASPEFAEIYANALPGFFSLNSTAVKMSDPLAQEFVSWREKCKPTIRSTYQILSRGTPNLENETWVMSANVINGTDTP
EAAAKKLQDGLDSWFKPVK
>Mature_418_residues
TRTTMKGLLLASSILGSAGLVQAQDATLTIESWRNDDLAIWQEKLIPAFEAKNPGIKVVFAPSAPTEYNAALNAKLDAGS
AGDLITCRPFDASLELYNKKHLADLTGLSGMENFSDVAKSAWTTDDGKATFCVPMASVIHGFIYNKDAFDQLGLAIPATE
EEFFAVLEKIKADGNYIPMAMGTKDLWEAATMGYQNIGPTYWKGEEGRLALLKGQQKLTDEPWVEPFRVLAKWKDYLGDG
FEAQTYPDSQNLFTLGRAAIYPAGSWEISGFNTQAEFKMGAFPPPVKKAGDTCYISDHNDIGIGLNAKSKNADAAKTFLT
WVASPEFAEIYANALPGFFSLNSTAVKMSDPLAQEFVSWREKCKPTIRSTYQILSRGTPNLENETWVMSANVINGTDTPE
AAAKKLQDGLDSWFKPVK

Specific function: Involved in a binding protein-dependent transport system responsible for the uptake of melibiose, raffinose and isomaltotriose [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 45870; Mature: 45739

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRTTMKGLLLASSILGSAGLVQAQDATLTIESWRNDDLAIWQEKLIPAFEAKNPGIKVV
CCCHHHHHHHHHHHHHCCCCCEEECCCEEEEECCCCCCHHHHHHHCCCHHCCCCCCEEEE
FAPSAPTEYNAALNAKLDAGSAGDLITCRPFDASLELYNKKHLADLTGLSGMENFSDVAK
ECCCCCCCCCCEEEEEECCCCCCCEEEECCCCCHHHHHCHHHHHHHHCCCCCHHHHHHHH
SAWTTDDGKATFCVPMASVIHGFIYNKDAFDQLGLAIPATEEEFFAVLEKIKADGNYIPM
HCCCCCCCCEEEEHHHHHHHHHHHCCCCHHHHCCEECCCCHHHHHHHHHHHHCCCCEEEE
AMGTKDLWEAATMGYQNIGPTYWKGEEGRLALLKGQQKLTDEPWVEPFRVLAKWKDYLGD
ECCCHHHHHHHHCCCCCCCCCEEECCCCCEEEEECCHHCCCCCCHHHHHHHHHHHHHHCC
GFEAQTYPDSQNLFTLGRAAIYPAGSWEISGFNTQAEFKMGAFPPPVKKAGDTCYISDHN
CCCCCCCCCCCCEEEECCEEECCCCCEEECCCCCCCCEEECCCCCCHHHCCCEEEEECCC
DIGIGLNAKSKNADAAKTFLTWVASPEFAEIYANALPGFFSLNSTAVKMSDPLAQEFVSW
CEEEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCEEECCCCEEECCCHHHHHHHHH
REKCKPTIRSTYQILSRGTPNLENETWVMSANVINGTDTPEAAAKKLQDGLDSWFKPVK
HHHCCHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TRTTMKGLLLASSILGSAGLVQAQDATLTIESWRNDDLAIWQEKLIPAFEAKNPGIKVV
CCHHHHHHHHHHHHHCCCCCEEECCCEEEEECCCCCCHHHHHHHCCCHHCCCCCCEEEE
FAPSAPTEYNAALNAKLDAGSAGDLITCRPFDASLELYNKKHLADLTGLSGMENFSDVAK
ECCCCCCCCCCEEEEEECCCCCCCEEEECCCCCHHHHHCHHHHHHHHCCCCCHHHHHHHH
SAWTTDDGKATFCVPMASVIHGFIYNKDAFDQLGLAIPATEEEFFAVLEKIKADGNYIPM
HCCCCCCCCEEEEHHHHHHHHHHHCCCCHHHHCCEECCCCHHHHHHHHHHHHCCCCEEEE
AMGTKDLWEAATMGYQNIGPTYWKGEEGRLALLKGQQKLTDEPWVEPFRVLAKWKDYLGD
ECCCHHHHHHHHCCCCCCCCCEEECCCCCEEEEECCHHCCCCCCHHHHHHHHHHHHHHCC
GFEAQTYPDSQNLFTLGRAAIYPAGSWEISGFNTQAEFKMGAFPPPVKKAGDTCYISDHN
CCCCCCCCCCCCEEEECCEEECCCCCEEECCCCCCCCEEECCCCCCHHHCCCEEEEECCC
DIGIGLNAKSKNADAAKTFLTWVASPEFAEIYANALPGFFSLNSTAVKMSDPLAQEFVSW
CEEEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCEEECCCCEEECCCHHHHHHHHH
REKCKPTIRSTYQILSRGTPNLENETWVMSANVINGTDTPEAAAKKLQDGLDSWFKPVK
HHHCCHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1537846; 12397186 [H]