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The map label for this gene is 150398547

Identifier: 150398547

GI number: 150398547

Start: 3557846

End: 3558661

Strand: Reverse

Name: 150398547

Synonym: Smed_3358

Alternate gene names: NA

Gene position: 3558661-3557846 (Counterclockwise)

Preceding gene: 150398551

Following gene: 150398537

Centisome position: 94.1

GC content: 67.03

Gene sequence:

>816_bases
ATGCAACACACTTCCTCCTCTTCCTTGCGGCGCCGCGCGGCGGGAGCCGCCGCGGTGATGGTCGCTCTGGCGCTGGCCTC
CTGCGCCGGCCAACAGGGCAGGGAAGAGCTGACGACCGGCTCGATCCCGAAACTCTCCAGGCCGGTGCAGTCGATGAACG
CGACGGAGCTGGCCGCCGCGGCCGAGCGCATCGGCCAGGCCTATGAGCGCAACCCGAAGGACCGGGAGGCGGGTCTGAAC
TATGCCAATCTCCTGCGCATGACGGGCCGCAACGAGCAAGCGCTTGCCGTCATGCAGCAGGTGGCAATCTACCACCCGGC
CGACCGGGAGGTCCTCGGCGCCTACGGAAAGGCCCAGGCCGCCGCGGGACAGCTCGAACAGGCGCTCACGACGATCGGCC
GCGCGCAGACCCCTGACCGGCCCGACTGGAAGCTGAAATCCGCGGAAGGCGCCATTCTCGACCAGCTTGGCCGCTCCACC
GAGGCGCGGCTGCGCTACCGCGAAGCGCTGGACCTCAAGCCCAACGAACCATCTGTCCTGTCCAATCTCGGCATGTCATA
CCTGCTGACGAAGGATTTGCGGACAGCCGAGACCTACCTCAAATCTGCAGCGAGCCAGCCGGATGCCGGCAGCAGCGTGC
GCCAGAACCTCGCTTTGGCCGTCGGTCTGCAGGGACGCTTCCAGGAAGCCGAGACGATCGCCCGGCAGGAACTGACATCG
GAGCAGGCGGAAGCCAACGTCGCCTATCTGCGCTCGATGCTATCGCAGCAGGGCGCCTGGAAACAGCTCGCACAGGCGGA
CGCGAAGGCGGATTGA

Upstream 100 bases:

>100_bases
TAACGCTCCGTTAGGGTTAACAGATTATTGCTGGAGTGAAAGTTGCGCCGCTGGGTGTTCGGGAGTTCCGGTGCATCACT
TGATGCTGGGGCTTTAGACG

Downstream 100 bases:

>100_bases
CACGCATCGCCATCCTCGGGCCTGACCAGATCTGCCATCCCCGGGCATATAATCGATGATGCTTGTGCATGGATCCTCGG
GTCAAGCGCGATGACGGTGG

Product: hypothetical protein

Products: NA

Alternate protein names: Pilus Assembly Protein; Tetratricopeptide TPR_2 Repeat Protein; TPR Domain-Containing Protein; Tetratricopeptide Repeat Domain Protein; Tetratricopeptide Tpr_1 Repeat-Containing Protein; TPR Repeat Protein; Tetratricopeptide Repeat Family Protein; Signal Peptide; Flp Pilus Assembly Protein TadD; Tetratricopeptide-Repeat Containing Protein

Number of amino acids: Translated: 271; Mature: 271

Protein sequence:

>271_residues
MQHTSSSSLRRRAAGAAAVMVALALASCAGQQGREELTTGSIPKLSRPVQSMNATELAAAAERIGQAYERNPKDREAGLN
YANLLRMTGRNEQALAVMQQVAIYHPADREVLGAYGKAQAAAGQLEQALTTIGRAQTPDRPDWKLKSAEGAILDQLGRST
EARLRYREALDLKPNEPSVLSNLGMSYLLTKDLRTAETYLKSAASQPDAGSSVRQNLALAVGLQGRFQEAETIARQELTS
EQAEANVAYLRSMLSQQGAWKQLAQADAKAD

Sequences:

>Translated_271_residues
MQHTSSSSLRRRAAGAAAVMVALALASCAGQQGREELTTGSIPKLSRPVQSMNATELAAAAERIGQAYERNPKDREAGLN
YANLLRMTGRNEQALAVMQQVAIYHPADREVLGAYGKAQAAAGQLEQALTTIGRAQTPDRPDWKLKSAEGAILDQLGRST
EARLRYREALDLKPNEPSVLSNLGMSYLLTKDLRTAETYLKSAASQPDAGSSVRQNLALAVGLQGRFQEAETIARQELTS
EQAEANVAYLRSMLSQQGAWKQLAQADAKAD
>Mature_271_residues
MQHTSSSSLRRRAAGAAAVMVALALASCAGQQGREELTTGSIPKLSRPVQSMNATELAAAAERIGQAYERNPKDREAGLN
YANLLRMTGRNEQALAVMQQVAIYHPADREVLGAYGKAQAAAGQLEQALTTIGRAQTPDRPDWKLKSAEGAILDQLGRST
EARLRYREALDLKPNEPSVLSNLGMSYLLTKDLRTAETYLKSAASQPDAGSSVRQNLALAVGLQGRFQEAETIARQELTS
EQAEANVAYLRSMLSQQGAWKQLAQADAKAD

Specific function: Unknown

COG id: COG5010

COG function: function code U; Flp pilus assembly protein TadD, contains TPR repeats

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29196; Mature: 29196

Theoretical pI: Translated: 9.27; Mature: 9.27

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQHTSSSSLRRRAAGAAAVMVALALASCAGQQGREELTTGSIPKLSRPVQSMNATELAAA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHCCHHHHHHH
AERIGQAYERNPKDREAGLNYANLLRMTGRNEQALAVMQQVAIYHPADREVLGAYGKAQA
HHHHHHHHHCCCCHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
AAGQLEQALTTIGRAQTPDRPDWKLKSAEGAILDQLGRSTEARLRYREALDLKPNEPSVL
HHHHHHHHHHHHHCCCCCCCCCCEECCCCHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHH
SNLGMSYLLTKDLRTAETYLKSAASQPDAGSSVRQNLALAVGLQGRFQEAETIARQELTS
HHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
EQAEANVAYLRSMLSQQGAWKQLAQADAKAD
HHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC
>Mature Secondary Structure
MQHTSSSSLRRRAAGAAAVMVALALASCAGQQGREELTTGSIPKLSRPVQSMNATELAAA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHCCHHHHHHH
AERIGQAYERNPKDREAGLNYANLLRMTGRNEQALAVMQQVAIYHPADREVLGAYGKAQA
HHHHHHHHHCCCCHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
AAGQLEQALTTIGRAQTPDRPDWKLKSAEGAILDQLGRSTEARLRYREALDLKPNEPSVL
HHHHHHHHHHHHHCCCCCCCCCCEECCCCHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHH
SNLGMSYLLTKDLRTAETYLKSAASQPDAGSSVRQNLALAVGLQGRFQEAETIARQELTS
HHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
EQAEANVAYLRSMLSQQGAWKQLAQADAKAD
HHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA